yrkR

168

unknown

locus: BSU_26410

Molecular weight: 16.38 kDa

pI: 8.82

Protein length: 139 aa

Gene length: 417 bp

function: unknown

product: unknown

essential: no

synonyms: yrkR

List of homologs in different organisms, belongs to COG3223 (Galperin et al., 2021)

Gene

Coordinates: 2,702,688 → 2,703,104

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The protein

Protein family

• psiE family (single member, according to UniProt)

Structure

• [AF|P54445]

[wiki|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|yrkP]-[gene|8A38FEFAA0FF91D989B77D40CBB3741902DC9D67|yrkQ]-[gene|E0DF6DE230AD0B632EEC0A1FB11EB32E59BD573E|yrkR]

  description: [Pubmed|18175906]

  regulatory mechanism

  • [protein|1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|yrkP]: activation, [Pubmed|18175906], in [regulon|protein:1582F9E6510C4FA87B3A5F3F4A7F39008C654AA9|yrkP regulon]

Biological materials

Mutant

• MGNA-C503 (yrkR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2501 NBRP B. subtilis, Japan]
• BKE26410 (Δ[gene|E0DF6DE230AD0B632EEC0A1FB11EB32E59BD573E|yrkR]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE26410 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCATGTTGTCTCCTATTT,  downstream forward: _UP4_TAATAAATTAGTTCGCATTA
• BKK26410 (Δ[gene|E0DF6DE230AD0B632EEC0A1FB11EB32E59BD573E|yrkR]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK26410 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATCATGTTGTCTCCTATTT,  downstream forward: _UP4_TAATAAATTAGTTCGCATTA

References

• 18175906