arfM

168

regulation of anaerobic genes

locus: BSU_37290

Molecular weight: 17.99 kDa

pI: 5.84

Protein length: 158 aa

Gene length: 477 bp

function: regulation of anaerobic genes

product: unknown

essential: no

ec: null

synonyms: arfM, ywiD

List of homologs in different organisms, belongs to COG0664 (Galperin et al., 2021)

Gene

Coordinates: 3,830,141  3,830,617

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The protein

Structure

• [AF|P46910]

Expression and Regulation

Operons

• genes: [gene|5D09E5276E3E6D008EFE4B02E4EA7DE1A33ADAE6|arfM]

  description: [Pubmed|9353933]

  regulation

  • expressed under anaerobic conditions ([protein|search|Fnr]) [http://www.ncbi.nlm.nih.gov/sites/entrez/8846791,16428414 PubMed]

  regulatory mechanism

  • [protein|7165CC59CDAF64AAE2D591936860304A53BE5DF6|fnr]: activation, [Pubmed|8846791,16428414], in [regulon|protein:7165CC59CDAF64AAE2D591936860304A53BE5DF6|fnr regulon]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA]: sigma factor, [Pubmed|11698370], in [regulon|protein:360F48D576DE950DF79C1A2677B7A35A8D8CC30C|sigA regulon]

Biological materials

Mutant

• MGNA-B663 (ywiD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1662 NBRP B. subtilis, Japan]
• BKE37290 ([gene|5D09E5276E3E6D008EFE4B02E4EA7DE1A33ADAE6|arfM]::erm  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKE37290 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATAGGAAAACCTCCTGTGC,  downstream forward: _UP4_TAAATAGAGCCGGTTTTTTT
• BKK37290 ([gene|5D09E5276E3E6D008EFE4B02E4EA7DE1A33ADAE6|arfM]::kan  trpC2) available at [http://bgsc.org/getdetail.php?bgscid=BKK37290 BGSC],  [Pubmed|28189581], upstream reverse: _UP1_CATAGGAAAACCTCCTGTGC,  downstream forward: _UP4_TAAATAGAGCCGGTTTTTTT

References

• 11698370,8846791,16428414