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2024-03-29T08:44:32Z
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http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Biofilm_formation&diff=209270
Biofilm formation
2016-07-04T16:39:36Z
<p>Eraspaud: /* Important original publications */</p>
<hr />
<div>Biofilms are the result of the multicellular lifestyle of ''B. subtilis''. They are characterized by the formation of a matrix polysaccharide (poly-N-acetyl glucosamine as a major polysaccharide {{PubMed|26078454}}) and an amyloid-like protein, [[TasA]]. Correction of ''[[sfp]]'', ''[[epsC]]'','' [[swrAA]]'', and ''[[degQ]]'' as well as introduction of ''rapP'' from a plasmid present in NCIB3610 results in biofilm formation in ''B. subtilis'' 168 {{PubMed|21278284}}.<br />
<br />
<br />
{{CategoryTree<br />
|Parents=<br />
* 4. [[Lifestyles]]<br />
** 4.1. [[Exponential and early post-exponential lifestyles]]<br />
|Neighbours=<br />
* 4.1.1. [[Motility and chemotaxis]]<br />
* 4.1.2. [[Swarming]]<br />
* 4.1.3. [[Sliding]]<br />
* 4.1.4. [[Biofilm formation]]<br />
* 4.1.5. [[Genetic competence]]<br />
|Related=<br />
[[SinR regulon]]<br />
|}}<br />
<br />
__TOC__<br />
<br><br><br><br />
==[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation in ''Subti''Pathways]==<br />
<br />
==Labs working on biofilm formation==<br />
* [[Roberto Grau]]<br />
* [[Daniel Kearns]]<br />
* [[Roberto Kolter]]<br />
* [[Akos T Kovacs]]<br />
* [[Oscar Kuipers]]<br />
* [[Beth Lazazzera]]<br />
* [[Richard Losick]]<br />
* [[Eric Raspaud]]<br />
* [[Nicola Stanley-Wall]]<br />
* [[Jörg Stülke]]<br />
<br />
==Key genes and operons involved in biofilm formation==<br />
* matrix polysaccharide synthesis {{PubMed|26078454}}: <br />
** ''[[epsA]]-[[epsB]]-[[epsC]]-[[epsD]]-[[epsE]]-[[epsF]]-[[epsG]]-[[epsH]]-[[epsI]]-[[epsJ]]-[[epsK]]-[[epsL]]-[[epsM]]-[[epsN]]-[[epsO]]''<br />
**'' [[galE]]''<br />
* amyloid protein synthesis, secretion and assembly<br />
** ''[[tapA]]-[[sipW]]-[[tasA]]''<br />
* repellent surface layer<br />
** ''[[bslA]]''<br />
* regulation<br />
** [[SlrR]]<br />
** [[SlrA]]<br />
** [[SinR]]<br />
** [[SinI]]<br />
** [[KinC]]<br />
** [[KinD]]<br />
** [[Spo0A]]<br />
** [[PtkA]]<br />
** [[TkmA]]<br />
** [[PtpZ]]<br />
** [[DegU]]<br />
** [[DegQ]]<br />
** [[YmdB]]<br />
** [[FtsH]]<br />
** [[Veg]]<br />
** [[MstX]]<br />
** [[YugO]]<br />
<br />
* other proteins required for biofilm formation<br />
** [[AmpS]]<br />
** [[FloT]]<br />
** [[LuxS]]<br />
** [[RemA]]<br />
** [[RemB]]<br />
** [[Rny]]<br />
** [[Sfp/1]]<br />
** [[Sfp/2]]<br />
** [[SpeA]]<br />
** [[SpeD]]<br />
** [[SwrAA]]<br />
** [[YisP]]<br />
** [[YlbF]]<br />
** [[YmcA]]<br />
** [[YvcA]]<br />
** [[YwcC]]<br />
** [[YxaB]]<br />
<br />
* other proteins required for efficient pellicle biofilm formation (mutant is out-competed by wild type)<br />
** [[Hag]]<br />
** [[FlgE]]<br />
** [[FliF]]<br />
** [[MotA]]<br />
** [[SigD]]<br />
** [[CheA]]<br />
** [[CheY]]<br />
** [[CheD]]<br />
** [[CheV]]<br />
** [[HemAT]]<br />
<br />
==Important original publications==<br />
<pubmed> 26122431, 26588577, 26152584, 26078454 25870300 26060272 25825426 23271809, 23300252 21267464 21278284 16091050 22232655 22371091 23341623 23406351 25768534 23012477,22934631 23517761 23569226 23564171 25035996 23637960 23645570 24256735 25422306 25680358 25713360 25894589 26200335 26873313</pubmed><br />
<br />
==Key reviews==<br />
<pubmed>16787201,24771632, 9891794,19054118,20890834,21109420,20519345,18381896 22024380 20735481 23353768 23791621 23927648 24384602 24909922 26104716 24988880 24608334 25907113</pubmed><br />
<br />
=Back to [[categories]]=</div>
Eraspaud
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Biofilm_formation&diff=209269
Biofilm formation
2016-07-04T16:37:46Z
<p>Eraspaud: /* Labs working on biofilm formation */</p>
<hr />
<div>Biofilms are the result of the multicellular lifestyle of ''B. subtilis''. They are characterized by the formation of a matrix polysaccharide (poly-N-acetyl glucosamine as a major polysaccharide {{PubMed|26078454}}) and an amyloid-like protein, [[TasA]]. Correction of ''[[sfp]]'', ''[[epsC]]'','' [[swrAA]]'', and ''[[degQ]]'' as well as introduction of ''rapP'' from a plasmid present in NCIB3610 results in biofilm formation in ''B. subtilis'' 168 {{PubMed|21278284}}.<br />
<br />
<br />
{{CategoryTree<br />
|Parents=<br />
* 4. [[Lifestyles]]<br />
** 4.1. [[Exponential and early post-exponential lifestyles]]<br />
|Neighbours=<br />
* 4.1.1. [[Motility and chemotaxis]]<br />
* 4.1.2. [[Swarming]]<br />
* 4.1.3. [[Sliding]]<br />
* 4.1.4. [[Biofilm formation]]<br />
* 4.1.5. [[Genetic competence]]<br />
|Related=<br />
[[SinR regulon]]<br />
|}}<br />
<br />
__TOC__<br />
<br><br><br><br />
==[http://subtiwiki.uni-goettingen.de/pathways/biofilm.html Biofilm formation in ''Subti''Pathways]==<br />
<br />
==Labs working on biofilm formation==<br />
* [[Roberto Grau]]<br />
* [[Daniel Kearns]]<br />
* [[Roberto Kolter]]<br />
* [[Akos T Kovacs]]<br />
* [[Oscar Kuipers]]<br />
* [[Beth Lazazzera]]<br />
* [[Richard Losick]]<br />
* [[Eric Raspaud]]<br />
* [[Nicola Stanley-Wall]]<br />
* [[Jörg Stülke]]<br />
<br />
==Key genes and operons involved in biofilm formation==<br />
* matrix polysaccharide synthesis {{PubMed|26078454}}: <br />
** ''[[epsA]]-[[epsB]]-[[epsC]]-[[epsD]]-[[epsE]]-[[epsF]]-[[epsG]]-[[epsH]]-[[epsI]]-[[epsJ]]-[[epsK]]-[[epsL]]-[[epsM]]-[[epsN]]-[[epsO]]''<br />
**'' [[galE]]''<br />
* amyloid protein synthesis, secretion and assembly<br />
** ''[[tapA]]-[[sipW]]-[[tasA]]''<br />
* repellent surface layer<br />
** ''[[bslA]]''<br />
* regulation<br />
** [[SlrR]]<br />
** [[SlrA]]<br />
** [[SinR]]<br />
** [[SinI]]<br />
** [[KinC]]<br />
** [[KinD]]<br />
** [[Spo0A]]<br />
** [[PtkA]]<br />
** [[TkmA]]<br />
** [[PtpZ]]<br />
** [[DegU]]<br />
** [[DegQ]]<br />
** [[YmdB]]<br />
** [[FtsH]]<br />
** [[Veg]]<br />
** [[MstX]]<br />
** [[YugO]]<br />
<br />
* other proteins required for biofilm formation<br />
** [[AmpS]]<br />
** [[FloT]]<br />
** [[LuxS]]<br />
** [[RemA]]<br />
** [[RemB]]<br />
** [[Rny]]<br />
** [[Sfp/1]]<br />
** [[Sfp/2]]<br />
** [[SpeA]]<br />
** [[SpeD]]<br />
** [[SwrAA]]<br />
** [[YisP]]<br />
** [[YlbF]]<br />
** [[YmcA]]<br />
** [[YvcA]]<br />
** [[YwcC]]<br />
** [[YxaB]]<br />
<br />
* other proteins required for efficient pellicle biofilm formation (mutant is out-competed by wild type)<br />
** [[Hag]]<br />
** [[FlgE]]<br />
** [[FliF]]<br />
** [[MotA]]<br />
** [[SigD]]<br />
** [[CheA]]<br />
** [[CheY]]<br />
** [[CheD]]<br />
** [[CheV]]<br />
** [[HemAT]]<br />
<br />
==Important original publications==<br />
<pubmed> 26122431, 26152584, 26078454 25870300 26060272 25825426 23271809, 23300252 21267464 21278284 16091050 22232655 22371091 23341623 23406351 25768534 23012477,22934631 23517761 23569226 23564171 25035996 23637960 23645570 24256735 25422306 25680358 25713360 25894589 26200335 26873313</pubmed><br />
<br />
==Key reviews==<br />
<pubmed>16787201,24771632, 9891794,19054118,20890834,21109420,20519345,18381896 22024380 20735481 23353768 23791621 23927648 24384602 24909922 26104716 24988880 24608334 25907113</pubmed><br />
<br />
=Back to [[categories]]=</div>
Eraspaud
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Labs_working_on_Bacillus&diff=209268
Labs working on Bacillus
2016-07-04T16:27:09Z
<p>Eraspaud: </p>
<hr />
<div>==If you don't find your own lab, please feel free to add a page==<br />
<br />
For help, see the [http://www.subtiwiki.uni-goettingen.de/otherFiles/tutorial.pps tutorial] or [mailto:jstuelk@gwdg.de ask us]<br />
<br />
==This is a partial list of groups working with ''Bacillus subtilis''==<br />
<br />
* [[Alessandra Albertini]]<br />
* [[Juan C. Alonso]]<br />
* [[Josef Altenbuchner]]<br />
* [[Haike Antelmann]]<br />
* [[Wayne Anderson]]<br />
* [[Arthur Aronson]]<br />
* [[Stephane Aymerich]]<br />
* [[Gert Bange]]<br />
* [[Imrich Barak]]<br />
* [[Dörte Becher]]<br />
* [[David Bechhofer]]<br />
* [[Melanie Barker Berkmen]]<br />
* [[Sigal Ben-Yehuda]]<br />
* [[Philippe Bessières]]<br />
* [[Marc Bramkamp]]<br />
* [[Sabine Brantl]]<br />
* [[Trygve Brautaset]]<br />
* [[Erhard Bremer]]<br />
* [[Richard Brennan]]<br />
* [[Romain Briandet]]<br />
* [[Bill Burkholder]]<br />
* [[Rut Carballido-Lopez]]<br />
* [[Fabian Commichau]]<br />
* [[Ciaran Condon]]<br />
* [[Simon Cutting]]<br />
* [[Richard Daniel]]<br />
* [[Diego de Mendoza]]<br />
* [[Isabel de Sa-Nogueira]]<br />
* [[Nathalie Declerck]]<br />
* [[Emma Denham]]<br />
* [[Kevin Devine]]<br />
* [[Josef Deutscher]]<br />
* [[Jan Maarten van Dijl]]<br />
* [[Mark Dillingham]]<br />
* [[Adam Driks]]<br />
* [[David Dubnau]]<br />
* [[Jonathan Dworkin]]<br />
* [[Patrick Eichenberger]]<br />
* [[Craig Ellermeier]]<br />
* [[Michael Elowitz]]<br />
* [[Jeff Errington]]<br />
* [[Eugenio Ferrari]]<br />
* [[Carol Fierke]]<br />
* [[Susan Fisher]]<br />
* [[Maryline Foglino]]<br />
* [[Karl Forchhammer]]<br />
* [[Simon Foster]]<br />
* [[Vincent Fromion]]<br />
* [[Masaya Fujita]]<br />
* [[Yasutaro Fujita]]<br />
* [[Anne Galinier]]<br />
* [[Alessandro Galizzi]]<br />
* [[Susanne Gebhard]]<br />
* [[Ulf Gerth]]<br />
* [[Boris Görke]]<br />
* [[Christophe Grangeasse]]<br />
* [[Peter Graumann]]<br />
* [[Carol Gross]]<br />
* [[Alan Grossman]]<br />
* [[Sven Halbedel]]<br />
* [[Bill Haldenwang]]<br />
* [[Leendert Hamoen]]<br />
* [[Liz Harry]]<br />
* [[Elisabeth Härtig]]<br />
* [[Roland Hartmann]]<br />
* [[Colin Harwood]]<br />
* [[Michael Hecker]]<br />
* [[Lars Hederstedt]]<br />
* [[John Helmann]]<br />
* [[Tina Henkin]]<br />
* [[Adriano Henriques]]<br />
* [[Christopher Henry]]<br />
* [[Jennifer Herman]]<br />
* [[Wolfgang Hillen]]<br />
* [[Jim Hoch]]<br />
* [[Marion Hulett]]<br />
* [[Oleg Igoshin]]<br />
* [[Mitsuhiro Itaya]]<br />
* [[Koreaki Ito]]<br />
* [[Laurent Janniere]]<br />
* [[Hanne Jarmer]]<br />
* [[Mark J. Jedrzejas]]<br />
* [[Bernard Joris]]<br />
* [[Matthieu Jules]]<br />
* [[Fujio Kawamura]]<br />
* [[Daniel Kearns]]<br />
* [[Dagmar Klostermeier]]<br />
* [[Anne-Brit Kolsto]]<br />
* [[Roberto Kolter]]<br />
* [[Vesa Kontinen]]<br />
* [[Akos T Kovacs]]<br />
* [[Libor Krasny]]<br />
* [[Lee Kroos]]<br />
* [[Oscar Kuipers]]<br />
* [[Michael Lalk]]<br />
* [[Beth Lazazzera]]<br />
* [[Peter Lewis]]<br />
* [[Rick Lewis]]<br />
* [[Daniel Lopez]]<br />
* [[Richard Losick]]<br />
* [[Charles Lovett]]<br />
* [[Shawn MacLellan]]<br />
* [[Ulrike Mäder]]<br />
* [[Ines Mandic-Mulec]]<br />
* [[Mohamed Marahiel]]<br />
* [[Isabelle Martin-Verstraete]]<br />
* [[Thorsten Mascher]]<br />
* [[Christoph Mayer]]<br />
* [[Friedhelm Meinhardt]]<br />
* [[Ivan Mijakovic]]<br />
* [[Ralf Moeller]]<br />
* [[Anne Moir]]<br />
* [[Charles Moran]]<br />
* [[Tarek Msadek]]<br />
* [[Michiko Nakano]]<br />
* [[Sylvie Nessler]]<br />
* [[Wayne Nicholson]]<br />
* [[Philippe Noirot]]<br />
* [[Michal Obuchowski]]<br />
* [[Naotake Ogasawara]]<br />
* [[Ole Økstad]]<br />
* [[George Ordal]]<br />
* [[Mario Pedraza-Reyes]]<br />
* [[Marta Perego]]<br />
* [[John Perkins]]<br />
* [[Patrick Piggot]]<br />
* [[Kit Pogliano]]<br />
* [[David Popham]]<br />
* [[Zoltan Pragai]]<br />
* [[Chet Price]]<br />
* [[Harald Putzer]]<br />
* [[Kumaran Ramamurthi]]<br />
* [[Eric Raspaud]]<br />
* [[Eduardo Robleto]]<br />
* [[David Rudner]]<br />
* [[Milton H. Saier]]<br />
* [[Margarita Salas]]<br />
* [[Uwe Sauer]]<br />
* [[Maria Schumacher]]<br />
* [[Wolfgang Schumann]]<br />
* [[Gerald Seidel]]<br />
* [[Junichi Sekiguchi]]<br />
* [[Peter Setlow]]<br />
* [[Irmgard Sinning]]<br />
* [[Linc Sonenshein]]<br />
* [[Panos Soultanas]]<br />
* [[George Spiegelman]]<br />
* [[Nicola Stanley-Wall]]<br />
* [[Jörg Stelling]]<br />
* [[Paul Straight]]<br />
* [[Mark Strauch]]<br />
* [[Jörg Stülke]]<br />
* [[Robert Switzer]]<br />
* [[Hendrik Szurmant]]<br />
* [[Gürol M. Süel]]<br />
* [[Kürsad Turgay]]<br />
* [[User:Jwveening |Jan-Willem Veening]]<br />
* [[Dennis Vitkup]]<br />
* [[Uwe Völker]]<br />
* [[Claes von Wachenfeldt]]<br />
* [[Thomas Wiegert]]<br />
* [[Tony Wilkinson]]<br />
* [[Wade Winkler]]<br />
* [[Christoph Wittmann]]<br />
* [[Ronald Yasbin]]<br />
* [[Ken-ichi Yoshida]]<br />
* [[Daniel R. Zeigler]]<br />
* [[Peter Zuber]]</div>
Eraspaud