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SubtiWiki - User contributions [en]
2024-03-29T13:26:25Z
User contributions
MediaWiki 1.30.0
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=BsrB&diff=90332
BsrB
2009-06-11T08:24:21Z
<p>BBeck: /* Labs working on this gene/RNA */</p>
<hr />
<div>* '''Description:''' 6S RNA<br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''bsrB''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || 6S RNA<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || antagonist of [[SigA]]<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 203 bp<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yocI]]'', ''[[azoR1]]''<br />
|-<br />
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt Gene sequence (+200bp) ]''' <br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:BsrB_context.gif]]<br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br />
<br/><br/><br />
<br />
<br/><br/><br/><br/><br/><br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:'''<br />
<br />
===Phenotypes of a mutant ===<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/bsrB.html]<br />
<br />
* '''SubtiList entry:''' no entry<br />
<br />
* '''Structure:''' <br />
<br />
=== Additional information===<br />
<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' ''bsrB'' [http://www.ncbi.nlm.nih.gov/sites/entrez/11886746 PubMed]<br />
<br />
* '''Sigma factor:''' <br />
<br />
* '''Regulation:''' expressed during vegetative growth[http://www.ncbi.nlm.nih.gov/sites/entrez/11886746 PubMed]<br />
<br />
* '''Regulatory mechanism:''' <br />
<br />
* '''Additional information:''' <br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:'''<br />
<br />
* '''Expression vector:'''<br />
<br />
* '''lacZ fusion:'''<br />
<br />
<br />
=Labs working on this gene/RNA=<br />
<br />
Kouji Nakamura, Tsukuba, University, Japan<br />
<br />
Roland Hartmann, Philipps-Universität Marburg, Marburg, Germany, [http://www.uni-marburg.de/fb16/ipc/ag_hartmann]<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
<br />
<pubmed>11886746 15811922, </pubmed><br />
# Ando Y, Asari S, Suzuma S, Yamane K, Nakamura K (2002) Expression of a small RNA, BS203 RNA, from the ''yocI-yocJ'' intergenic region of ''Bacillus subtilis'' genome.''FEMS Microbiol. Lett.'' '''207:''' 29-33. [http://www.ncbi.nlm.nih.gov/sites/entrez/11886746 PubMed]<br />
# Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR(2005) 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.''RNA'' '''11:''' 774-784. [http://www.ncbi.nlm.nih.gov/sites/entrez/15811922 PubMed]<br />
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]</div>
BBeck
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=BsrA&diff=90331
BsrA
2009-06-11T08:23:05Z
<p>BBeck: /* Labs working on this gene/RNA */</p>
<hr />
<div>* '''Description:''' 6S RNA<br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''bsrA''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || '' ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || 6S RNA<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || antagonist of [[SigA]]<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length''' || 190 bp<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yrvM]]'', ''[[aspS]]''<br />
|-<br />
|style="background:#FAF8CC;" align="center"|'''[http://subtiwiki.uni-goettingen.de/genE.txt Gene sequence (+200bp) ]''' <br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:BsrA_context.jpeg]]<br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br />
<br/><br/><br />
<br />
<br/><br/><br/><br/><br/><br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:'''<br />
<br />
===Phenotypes of a mutant ===<br />
<br />
reduced growth rate [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]<br />
<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' no entry<br />
<br />
* '''SubtiList entry:''' no entry<br />
<br />
* '''Structure:''' <br />
<br />
=== Additional information===<br />
<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' ''bsrA'' [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]<br />
<br />
* '''Sigma factor:''' [[SigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]<br />
<br />
* '''Regulation:''' expressed in vegetative cells [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]<br />
<br />
* '''Regulatory mechanism:''' <br />
<br />
* '''Additional information:''' transcribed as 201 nt RNA, processed to mature 190 bp 6S RNA [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]<br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:'''<br />
<br />
* '''Expression vector:'''<br />
<br />
* '''lacZ fusion:'''<br />
<br />
<br />
=Labs working on this gene/RNA=<br />
<br />
Kouji Nakamura, Tsukuba, University, Japan<br />
<br />
Roland Hartmann, Philipps-Universität Marburg, Marburg, Germany, [http://www.uni-marburg.de/fb16/ipc/ag_hartmann]<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
<br />
<pubmed>12177353 15811922, </pubmed><br />
# Suzuma S, Asari S, Bunai K, Yoshino K, Ando Y, Kakeshita H, Fujita M, Nakamura K, Yamane K (2002) Identification and characterization of novel small RNAs in the ''aspS-yrvM'' intergenic region of the ''Bacillus subtilis'' genome.. ''Microbiology'' '''148:''' 2591-2598. [http://www.ncbi.nlm.nih.gov/sites/entrez/12177353 PubMed]<br />
# Barrick JE, Sudarsan N, Weinberg Z, Ruzzo WL, Breaker RR(2005) 6S RNA is a widespread regulator of eubacterial RNA polymerase that resembles an open promoter.''RNA'' '''11:''' 774-784. [http://www.ncbi.nlm.nih.gov/sites/entrez/15811922 PubMed]<br />
# Author1, Author2 & Author3 (year) Title ''Journal'' '''volume:''' page-page. [http://www.ncbi.nlm.nih.gov/sites/entrez/PMID PubMed]</div>
BBeck
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Roland_Hartmann&diff=90330
Roland Hartmann
2009-06-11T08:17:55Z
<p>BBeck: /* Main research interests */</p>
<hr />
<div>= Lab head: Roland Hartmann= <br />
'''Additional information'''<br />
* [mailto:roland.hartmann@staff.uni-marburg.de send mail]<br />
* location: Marburg, Germany<br />
* Homepage: [http://www.uni-marburg.de/fb16/ipc/ag_hartmann]<br />
<br />
= Publications = <br />
[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pubmed&term=%22Hartmann%2BRK%22%5Bau%5D&dispmax=50 Pubmed]<br />
<br />
= Main research interests = <br />
tRNA processing, RNase P, 6S-RNA</div>
BBeck
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Roland_Hartmann&diff=90329
Roland Hartmann
2009-06-11T08:17:24Z
<p>BBeck: /* Lab head: Name Name */</p>
<hr />
<div>= Lab head: Roland Hartmann= <br />
'''Additional information'''<br />
* [mailto:roland.hartmann@staff.uni-marburg.de send mail]<br />
* location: Marburg, Germany<br />
* Homepage: [http://www.uni-marburg.de/fb16/ipc/ag_hartmann]<br />
<br />
= Publications = <br />
[http://www.ncbi.nlm.nih.gov/sites/entrez?cmd=search&db=pubmed&term=%22Hartmann%2BRK%22%5Bau%5D&dispmax=50 Pubmed]<br />
<br />
= Main research interests = <br />
tRNA processing, RNase P</div>
BBeck