http://subtiwiki.uni-goettingen.de/wiki//api.php?action=feedcontributions&user=Aschmei&feedformat=atom
SubtiWiki - User contributions [en]
2024-03-28T09:16:28Z
User contributions
MediaWiki 1.30.0
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=UgtP&diff=176856
UgtP
2012-10-30T09:31:07Z
<p>Aschmei: Undo revision 176855 by Aschmei (talk)</p>
<hr />
<div>* '''Description:''' UDP-glucose diacylglycerol glucosyltransferase, growth-rate dependent inhibitor of [[cell division]] <br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''ugtP''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ypfP ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || UDP-glucose diacylglycerol glucosyltransferase<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || synthesis of glycolipids and anchoring of lipoteichoic <br/>acid, inhibition of [[FtsZ]] assembly<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU21920 ugtP]<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/UgtP UgtP]<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_synthesis.html Lipid synthesis]'''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.398 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1146 bp, 382 aa <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[metA]]'', ''[[cspD]]''<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14110&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''<br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:ugtP_context.gif]]<br />
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div><br />
|-<br />
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ugtP_2306514_2307662_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ugtP_expression.png|500px]]<br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br/><br/><br/><br/><br />
<br/><br/><br/><br/><br />
<br/><br/><br/><br/><br />
<br/><br/><br/><br/><br/><br/><br />
<br />
= [[Categories]] containing this gene/protein =<br />
{{SubtiWiki category|[[cell division]]}},<br />
{{SubtiWiki category|[[lipid metabolism/ other]]}},<br />
{{SubtiWiki category|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}},<br />
{{SubtiWiki category|[[membrane proteins]]}}<br />
<br />
= This gene is a member of the following [[regulons]] =<br />
{{SubtiWiki regulon|[[SigM regulon]]}}<br />
<br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:''' BSU21920<br />
<br />
===Phenotypes of a mutant ===<br />
** cells are bent and distended {{PubMed|22362028}}<br />
** increased expression of the [[SigM]], [[SigV]], and [[SigX]] regulons {{PubMed|22362028}}<br />
** altered [[localization]] of [[MreB]] (irregular clusters instead of helical dots) {{PubMed|22362028}}<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' no entry<br />
<br />
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11611]<br />
<br />
=== Additional information===<br />
<br />
<br />
=The protein=<br />
<br />
=== Basic information/ Evolution ===<br />
<br />
* '''Catalyzed reaction/ biological activity:''' <br />
** UDP-glucose + 1,2-diacylglycerol = UDP + 1,2-diacyl-3-(O-beta-D-glucopyranosyl)-sn-glycerol (according to Swiss-Prot) <br />
** the interaction with [[FtsZ]] results in inhibition of [[cell division]] and an increase of cell size {{PubMed|22931116}}<br />
<br />
* '''Protein family:'''<br />
<br />
* '''Paralogous protein(s):'''<br />
<br />
=== Extended information on the protein ===<br />
<br />
* '''Kinetic information:''' <br />
<br />
* '''Domains:''' <br />
<br />
* '''Modification:'''<br />
<br />
* '''Cofactor(s):'''<br />
<br />
* '''Effectors of protein activity:'''<br />
** oligomerization of [[UgtP]] is inhibited by UDP-Glc and by interaction with [[FtsZ]] {{PubMed|22931116}}<br />
<br />
* '''[[SubtInteract|Interactions]]:'''<br />
** [[EzrA]]-[[UgtP]] {{PubMed|17662947}}<br />
** [[UgtP]]-[[UgtP]] {{PubMed|17662947}}, forms oligomers {{PubMed|22931116}}<br />
** [[UgtP]]-[[FtsZ]] (under nutrient rich conditions) {{PubMed|22931116}}<br />
<br />
* '''[[Localization]]:''' <br />
** membrane-bound protein, self-assembles into tightly wound spirals ''in vitro'' {{PubMed|17662947}}<br />
** under nutrient rich conditions (increased concentration of UDP-Glc): throughout the cell, concentrated at the cell poles and/or the cytokinetic ring, interaction with [[FtsZ]] {{PubMed|22931116}}<br />
** under nutrient poor conditions: forms punctate foci (oligomers), no interaction with [[FtsZ]] {{PubMed|22931116}}<br />
=== Database entries ===<br />
<br />
* '''Structure:''' <br />
<br />
* '''UniProt:''' [http://www.uniprot.org/uniprot/P54166 P54166]<br />
<br />
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU21920]<br />
<br />
* '''E.C. number:'''<br />
<br />
=== Additional information===<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' <br />
<br />
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ugtP_2306514_2307662_1 ugtP] {{PubMed|22383849}}<br />
<br />
* '''Sigma factor:''' [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/18179421 PubMed]<br />
<br />
* '''Regulation:''' <br />
<br />
* '''Regulatory mechanism:''' <br />
<br />
* '''Additional information:'''<br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:'''<br />
<br />
* '''Expression vector:'''<br />
<br />
* '''lacZ fusion:'''<br />
<br />
* '''GFP fusion:'''<br />
<br />
* '''two-hybrid system:''' <br />
<br />
* '''Antibody:'''<br />
<br />
=Labs working on this gene/protein=<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
<br />
==Reviews==<br />
<pubmed> 19680248 17662935 22575476 </pubmed><br />
<br />
==Original Publications==<br />
'''Additional publications:''' {{PubMed|22931116}}<br />
<pubmed>9244290,18820022,17662947,9720862 22362028 15640167 </pubmed><br />
<br />
[[Category:Protein-coding genes]]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=UgtP&diff=176855
UgtP
2012-10-30T09:29:57Z
<p>Aschmei: /* Original Publications */</p>
<hr />
<div>* '''Description:''' UDP-glucose diacylglycerol glucosyltransferase, growth-rate dependent inhibitor of [[cell division]] <br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''ugtP''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''ypfP ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || UDP-glucose diacylglycerol glucosyltransferase<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || synthesis of glycolipids and anchoring of lipoteichoic <br/>acid, inhibition of [[FtsZ]] assembly<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Gene expression levels in [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express]''': [http://cellpublisher.gobics.de/subtiexpress/bsu/BSU21920 ugtP]<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Interactions involving this protein in [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact]''': [http://cellpublisher.gobics.de/subtinteract/interactionList/2/UgtP UgtP]<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_synthesis.html Lipid synthesis]'''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 43 kDa, 8.398 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1146 bp, 382 aa <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[metA]]'', ''[[cspD]]''<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB14110&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''<br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:ugtP_context.gif]]<br />
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div><br />
|-<br />
|colspan="2" |'''[http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ugtP_2306514_2307662_1 Expression at a glance]'''&#160;&#160;&#160;{{PubMed|22383849}}<br/>[[Image:ugtP_expression.png|500px]]<br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br/><br/><br/><br/><br />
<br/><br/><br/><br/><br />
<br/><br/><br/><br/><br />
<br/><br/><br/><br/><br/><br/><br />
<br />
= [[Categories]] containing this gene/protein =<br />
{{SubtiWiki category|[[cell division]]}},<br />
{{SubtiWiki category|[[lipid metabolism/ other]]}},<br />
{{SubtiWiki category|[[cell envelope stress proteins (controlled by SigM, V, W, X, Y)]]}},<br />
{{SubtiWiki category|[[membrane proteins]]}}<br />
<br />
= This gene is a member of the following [[regulons]] =<br />
{{SubtiWiki regulon|[[SigM regulon]]}}<br />
<br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:''' BSU21920<br />
<br />
===Phenotypes of a mutant ===<br />
** cells are bent and distended {{PubMed|22362028}}<br />
** increased expression of the [[SigM]], [[SigV]], and [[SigX]] regulons {{PubMed|22362028}}<br />
** altered [[localization]] of [[MreB]] (irregular clusters instead of helical dots) {{PubMed|22362028}}<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' no entry<br />
<br />
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11611]<br />
<br />
=== Additional information===<br />
<br />
<br />
=The protein=<br />
<br />
=== Basic information/ Evolution ===<br />
<br />
* '''Catalyzed reaction/ biological activity:''' <br />
** UDP-glucose + 1,2-diacylglycerol = UDP + 1,2-diacyl-3-(O-beta-D-glucopyranosyl)-sn-glycerol (according to Swiss-Prot) <br />
** the interaction with [[FtsZ]] results in inhibition of [[cell division]] and an increase of cell size {{PubMed|22931116}}<br />
<br />
* '''Protein family:'''<br />
<br />
* '''Paralogous protein(s):'''<br />
<br />
=== Extended information on the protein ===<br />
<br />
* '''Kinetic information:''' <br />
<br />
* '''Domains:''' <br />
<br />
* '''Modification:'''<br />
<br />
* '''Cofactor(s):'''<br />
<br />
* '''Effectors of protein activity:'''<br />
** oligomerization of [[UgtP]] is inhibited by UDP-Glc and by interaction with [[FtsZ]] {{PubMed|22931116}}<br />
<br />
* '''[[SubtInteract|Interactions]]:'''<br />
** [[EzrA]]-[[UgtP]] {{PubMed|17662947}}<br />
** [[UgtP]]-[[UgtP]] {{PubMed|17662947}}, forms oligomers {{PubMed|22931116}}<br />
** [[UgtP]]-[[FtsZ]] (under nutrient rich conditions) {{PubMed|22931116}}<br />
<br />
* '''[[Localization]]:''' <br />
** membrane-bound protein, self-assembles into tightly wound spirals ''in vitro'' {{PubMed|17662947}}<br />
** under nutrient rich conditions (increased concentration of UDP-Glc): throughout the cell, concentrated at the cell poles and/or the cytokinetic ring, interaction with [[FtsZ]] {{PubMed|22931116}}<br />
** under nutrient poor conditions: forms punctate foci (oligomers), no interaction with [[FtsZ]] {{PubMed|22931116}}<br />
=== Database entries ===<br />
<br />
* '''Structure:''' <br />
<br />
* '''UniProt:''' [http://www.uniprot.org/uniprot/P54166 P54166]<br />
<br />
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU21920]<br />
<br />
* '''E.C. number:'''<br />
<br />
=== Additional information===<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' <br />
<br />
* '''Expression browser:''' [http://genome.jouy.inra.fr/cgi-bin/seb/viewdetail.py?id=ugtP_2306514_2307662_1 ugtP] {{PubMed|22383849}}<br />
<br />
* '''Sigma factor:''' [[SigM]] [http://www.ncbi.nlm.nih.gov/sites/entrez/18179421 PubMed]<br />
<br />
* '''Regulation:''' <br />
<br />
* '''Regulatory mechanism:''' <br />
<br />
* '''Additional information:'''<br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:'''<br />
<br />
* '''Expression vector:'''<br />
<br />
* '''lacZ fusion:'''<br />
<br />
* '''GFP fusion:'''<br />
<br />
* '''two-hybrid system:''' <br />
<br />
* '''Antibody:'''<br />
<br />
=Labs working on this gene/protein=<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
<br />
==Reviews==<br />
<pubmed> 19680248 17662935 22575476 </pubmed><br />
<br />
==Original Publications==<br />
'''Additional publications:''' {{PubMed|22931116}}<br />
<pubmed>9244290,18820022,17662947,9720862 22362028 15640167 22931116 </pubmed><br />
<br />
[[Category:Protein-coding genes]]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=176013
Main Page
2012-09-19T07:59:21Z
<p>Aschmei: Undo revision 176008 by 115.248.19.213 (talk)</p>
<hr />
<div><big>Welcome to '''''Subti''Wiki'''! </big> - ''Bacillus subtilis'' annotation the "wiki" way!<br/><br />
[[File:Start_page_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/]]<br />
[[File:Playground_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Playground]]<br />
[[File:Wish_List_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Wish_List]]<br />
<br/><br />
<big>'''Contact:'''</big> [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br />
<br />
<br/><br />
<big>'''Upcoming events:'''</big> <br />
* The [http://www.grampositiveconference.org/ 7th International Conference on Gram-positive Microorganisms] (17th International Conference on Bacilli) organized by [[Marta Perego]], [[Jim Hoch]], and [[Hendrik Szurmant]] is going to take place from June 23 - 27, 2013, in [http://www.montecatini.it/english/ Montecatini Terme] in lovely Tuscany, Italy, [http://www.grampositiveconference.org/ conference website], [mailto:fchizer@scripps.edu contact]<br />
* [[Past conferences]]<br />
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<br/><br />
<big>'''New: Subtiwiki is now on [http://www.facebook.com/pages/SubtiWiki/201847669864806 Facebook] - please give it a +1!'''</big> <br />
<br />
<br />
<br/><br />
<big>'''Now online: A description of ''Subti''Wiki, ''Subti''Pathways, and ''Subt''Interact in the [http://nar.oxfordjournals.org/content/40/D1/D1278.full.pdf+html 2012 Database issue of Nucleic Acids Research]'''</big> <br />
<pubmed> 22096228 </pubmed><br />
<br />
<br/><br />
<big>'''Paper of the month: September 2012'''</big> <br />
* [http://www.ncbi.nlm.nih.gov/pubmed/22864117 Chiba and Ito] studied how the translation of [[YidC2]], a membrane protein biogenesis factor, is controlled by [[SpoIIIJ]] availability via ribosome stalling of the ''[[mifM]]'' mRNA.<br />
* '''Relevant ''Subti''Wiki pages:''' [[Koreaki Ito]], [[translation]], [[YidC2]], [[SpoIIIJ]], ''[[mifM]]''<br />
<pubmed> 22864117 </pubmed><br />
* [[Previous papers of the month]]<br />
<br />
<br/><br />
<big>'''New procedure for account creation:'''</big> <br />
* Due to massive spam attacks, we had to change our policy for the creation of accounts. If you want to create an account, just [mailto:jstuelk@gwdg.de send me a mail]. We will create the account for you as quickly as possible, then you can change your password. This does not affect existing accounts, which remain active. <br/><br />
* '''Please remember that all members of the ''Bacillus'' community are invited to create accounts and to contribute to ''Subti''Wiki!''' <br />
<br/><br/><br />
<big>'''News in ''Subti''Wiki:'''</big> <br />
* '''August 2012''': [http://cellpublisher.gobics.de/subtiexpress/ ''Subti''Express], the new compagnon of ''Subti''Wiki devoted to gene expression is online! Try it out!<br />
* '''May 2012:''' updated Excel files that map all genes to [[categories]] and [[regulons]] as well as the general updated identity mapping of all genes were uploaded.<br />
* '''April 2012:''' Links for expression data under 104 different conditions (based on [http://www.ncbi.nlm.nih.gov/pubmed/22383849 Nicolas ''et al''., 2012]) have been added to the expression section of the individual gene pages<br />
* '''April 2011:''' [http://cellpublisher.gobics.de/subtinteract/startpage/start/ ''Subt''Interact], a presentation of [[protein-protein interactions]] in ''B. subtilis'', is online! <br />
* '''December 2010:''' [http://cellpublisher.gobics.de/scp.html SubtiCellPublisher] allows the conversion of CellDesigner diagrams to navigatable presentations in the style of [[SubtiPathways]]<br />
* '''December 2010:''' all genes are linked to [[regulons]], and the pages of the [[regulons]] provide an overview on all genes that are members of this specific regulon.<br />
* '''December 2010:''' all genes/proteins are linked to [[categories]], and the pages of the [[categories]] provide an overview on all genes/proteins that are members of this specific category.<br />
* '''August 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources], [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis], [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling], and [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] were uploaded to [[SubtiPathways]]<br />
* '''March 2010:''' novel [[plasmids]] for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, [[pGP1087]] and [[pGP1331]])<br />
<br />
<br/><br />
{| border="0" cellpadding="1"<br />
|width="300"|<big>'''Genes''' (examples)</big><br />
|width="300"|<big>'''Additional pages'''</big><br />
|- style="height:20px" <br />
| ''[[spo0A]]'' || '''[http://subtipathways.uni-goettingen.de ''Subti''Pathways]''' <br />
|-<br />
| ''[[glnA]]'' || '''[[Lists of genes, proteins and RNAs]]'''<br />
|-<br />
| ''[[rny]]'' || '''[[Categories]]'''<br />
|-<br />
| ''[[psdA]]'' || '''[[Regulons]]''' <br />
|-<br />
| ''[[pckA]]'' || '''[[methods]]''' <br />
|-<br />
| ''[[dnaA]]'' || '''[[metabolism]]''' <br />
|-<br />
| ''[[rnpA]]'' || '''[[protein-protein interactions]]''' <br />
|-<br />
| ''[[sigB]]'' || '''[[genome-wide analyses]]'''<br />
|-<br />
| ''[[ptkA]]'' || '''[[list of plasmids]]'''<br />
|-<br />
| ''[[mreC]]'' || '''[[labs working on Bacillus|labs working on ''Bacillus'']]'''<br />
|-<br />
| ''[[ccpA]]'' || '''[[the people behind SubtiWiki|the people behind ''Subti''Wiki]]''' <br />
|-<br />
| ''[[sr1]]'' || '''[[template]]''' <br />
|-<br />
| || <br />
|}<br />
<br><br />
<big>'''Publications describing ''Subti''Wiki and ''Subti''Pathways:'''</big><br />
<div style="width:73%"><pubmed>20157485 19959575</pubmed></div><br />
<br><br><br><br><br><br></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Quorum_sensing&diff=151600
Quorum sensing
2012-01-26T08:50:42Z
<p>Aschmei: Undo revision 149792 by 46.17.98.197 (talk)</p>
<hr />
<div>{{CategoryTree<br />
|Parents=<br />
* 3. [[Information processing]]<br />
** 3.4. [[Regulation of gene expression]]<br />
|Neighbours=<br />
* 3.4.1. [[Sigma factors and their control]]<br />
* 3.4.2. [[Transcription factors and their control]]<br />
* 3.4.3. [[Trigger enzymes]]<br />
* 3.4.4. [[RNA binding regulators]]<br />
* 3.4.5. [[Regulators of core metabolism]]<br />
* 3.4.6. [[Transition state regulators]]<br />
* 3.4.7. [[Phosphorelay]]<br />
* 3.4.8. [[Quorum sensing]]<br />
|Related=<br />
none <br />
|}}<br />
<br />
== Genes in this functional category ==<br />
* ''[[comA]]''<br />
* ''[[comP]]''<br />
* ''[[comQ]]''<br />
* ''[[comX]]''<br />
* ''[[luxS]]''<br />
* ''[[phrA]]''<br />
* ''[[phrC]]''<br />
* ''[[phrE]]''<br />
* ''[[phrF]]''<br />
* ''[[phrG]]''<br />
* ''[[phrH]]''<br />
* ''[[phrI]]''<br />
* ''[[phrK]]''<br />
* ''[[rapA]]''<br />
* ''[[rapC]]''<br />
* ''[[rapD]]''<br />
* ''[[rapE]]''<br />
* ''[[rapF]]''<br />
* ''[[rapG]]''<br />
* ''[[rapH]]''<br />
* ''[[rapI]]''<br />
* ''[[rapK]]''<br />
<br />
==Important reviews==<br />
<pubmed> 20378052 </pubmed><br />
=Back to [[categories]]=</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Quorum_sensing&diff=151598
Quorum sensing
2012-01-26T08:50:20Z
<p>Aschmei: Undo revision 151478 by 46.17.98.197 (talk)</p>
<hr />
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Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Proteins_of_unknown_function&diff=147432
Proteins of unknown function
2011-11-22T15:28:10Z
<p>Aschmei: </p>
<hr />
<div>{{CategoryTree2<br />
|Parents=<br />
* 6. [[Groups of genes]]<br />
|Neighbours=<br />
* 6.1. [[Essential genes]]<br />
* 6.2. [[Membrane proteins]]<br />
* 6.3. [[GTP-binding proteins]]<br />
* 6.4. [[Phosphoproteins]]<br />
* 6.5. [[Universally conserved proteins]]<br />
* 6.6. [[Poorly characterized/ putative enzymes]]<br />
* 6.7. [[Proteins of unknown function]]<br />
* 6.8. [[Short peptides]]<br />
* 6.9. [[ncRNA]]<br />
* 6.10. [[Pseudogenes]]<br />
|Related=<br />
none <br />
|}}<br />
<br />
== Genes in this functional category ==<br />
* ''[[acuB]]'' (no homolog in ''E. coli'')<br />
* ''[[antE]]''<br />
* ''[[ask]]''<br />
* ''[[cinA]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=ENZYME&object=G7162-MONOMER ''yfaY''] (aa 1 ... 300) and [http://ecocyc.org/ECOLI/NEW-IMAGE?type=ENZYME&object=NRDF-MONOMER ''nrdF''] (aa 270 ... 416) from ''E. coli''<br />
* ''[[eag]]''<br />
* ''[[ecsC]]''<br />
* ''[[mraZ]]''<br />
* ''[[mtnU]]''<br />
* ''[[pcrB]]''<br />
* ''[[skfG]]''<br />
* ''[[skfH]]''<br />
* ''[[slp]]''<br />
* ''[[veg]]''<br />
* ''[[yaaA]]''<br />
* ''[[yaaC]]''<br />
* ''[[yaaK]]''<br />
* ''[[yaaL]]''<br />
* ''[[yaaQ]]''<br />
* ''[[yaaR]]''<br />
* ''[[yabB]]''<br />
* ''[[yabD]]''<br />
* ''[[yabN]]''<br />
* ''[[yabS]]''<br />
* ''[[yacP]]''<br />
* ''[[yazA]]''<br />
* ''[[yazB]]''<br />
* ''[[ybaJ]]''<br />
* ''[[ybaR]]''<br />
* ''[[ybbC]]''<br />
* ''[[ybbJ]]''<br />
* ''[[ybbK]]''<br />
* ''[[ybbR]]''<br />
* ''[[ybbU]]''<br />
* ''[[ybcC]]''<br />
* ''[[ybcH]]''<br />
* ''[[ybcI]]''<br />
* ''[[ybdG]]''<br />
* ''[[ybdN]]''<br />
* ''[[ybdO]]''<br />
* ''[[ybdZ]]''<br />
* ''[[ybeF]]''<br />
* ''[[ybfA]]''<br />
* ''[[ybfB]]''<br />
* ''[[ybfE]]''<br />
* ''[[ybfF]]''<br />
* ''[[ybfH]]''<br />
* ''[[ybfJ]]''<br />
* ''[[ybfN]]''<br />
* ''[[ybxB]]''<br />
* ''[[ybzG]]''<br />
* ''[[ybzH]]''<br />
* ''[[ybzI]]''<br />
* ''[[ycbO]]'' (no homolog in ''E. coli'')<br />
* ''[[yccF]]'' (no homolog in ''E. coli'')<br />
* ''[[ycdB]]'' (no homolog in ''E. coli'')<br />
* ''[[ycdC]]'' (no homolog in ''E. coli'')<br />
* ''[[yceB]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7654 ''yhbW''] (function unknown) in ''E. Coli''<br />
* ''[[ycgA]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7190 ''yfcC''] (function unknown) in ''E. Coli''<br />
* ''[[ycgB]]'' (no homolog in ''E. coli'')<br />
* ''[[ycgI]]'' (no homolog in ''E. coli'')<br />
* ''[[ycgL]]'' (no homolog in ''E. coli'')<br />
* ''[[ycgT]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11032 ''trxB''] (thioredoxin reductase) in ''E. Coli''<br />
* ''[[yclG]]'' (no homolog in ''E. coli'')<br />
* ''[[ycnE]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G6805 ''yneC''] (function unknown) in ''E. Coli''<br />
* ''[[ycnI]]'' (no homolog in ''E. coli'')<br />
* ''[[ycnL]]'' (no homolog in ''E. coli'')<br />
* ''[[ycsE]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11195 ''yidA''] (function unknown) in ''E. Coli''<br />
* ''[[ycsI]]'' (no homolog in ''E. coli'')<br />
* ''[[ycxA]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11053 ''uhpC''] (protein controlling uhpA activity) in ''E. Coli''<br />
* ''[[ycxB]]'' (no homolog in ''E. coli'')<br />
* ''[[ycxC]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11639 ''eamA (ydeD)''] (function unknown) in ''E. Coli''<br />
* ''[[yczC]]'' (no homolog in ''E. coli'')<br />
* ''[[yczE]]'' (no homolog in ''E. coli'')<br />
* ''[[yczF]]'' (no homolog in ''E. coli'')<br />
* ''[[yczH]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7804 ''ysgA''] (function unknown) in ''E. Coli''<br />
* ''[[yczI]]'' (no homolog in ''E. coli'')<br />
* ''[[yczJ]]'' (no homolog in ''E. coli'')<br />
* ''[[yczK]]'' (no homolog in ''E. coli'')<br />
* ''[[yczL]]'' (no homolog in ''E. coli'')<br />
* ''[[yczO]]'' (no homolog in ''E. coli'')<br />
* ''[[ydaB]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11530 ''fadD''] (acyl-CoA synthetase) in ''E. Coli''<br />
* ''[[ydaC]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11473 ''ubiE''] (reaction: ...) in ''E. Coli''<br />
* ''[[ydaJ]]'' (no homolog in ''E. coli'')<br />
* ''[[ydaK]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11257 ''adrA (yaiC)''] (function unknown) in ''E. Coli''<br />
* ''[[ydaL]]'' (no homolog in ''E. coli'')<br />
* ''[[ydaN]]'' (no homolog in ''E. coli'')v<br />
* ''[[ydaO]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11896 ''plaP (yeeF)''] (function unknown) in ''E. Coli''<br />
* ''[[ydbB]]'' (no homolog in ''E. coli'')<br />
* ''[[ydbC]]'' (no homolog in ''E. coli'')<br />
* ''[[ydbI]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7310 ''yfgO''] (function unknown) in ''E. Coli''<br />
* ''[[ydbL]]'' (no homolog in ''E. coli'')<br />
* ''[[ydcF]]'' (no homolog in ''E. coli'')<br />
* ''[[ydcG]]'' (no homolog in ''E. coli'')<br />
* ''[[ydcH]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11435 ''marR''] (repressor of mar operon) in ''E. Coli''<br />
* ''[[ydcI]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7746 ''yhgF''] (function unknown) in ''E. Coli''<br />
* ''[[ydcK]]'' (no homolog in ''E. coli'')<br />
* ''[[ydcO]]'' (no homolog in ''E. coli'')<br />
* ''[[ydcS]]'' (no homolog in ''E. coli'')<br />
* ''[[ydcT]]'' (no homolog in ''E. coli'')<br />
* ''[[yddA]]'' (no homolog in ''E. coli'')<br />
* ''[[yddC]]'' (no homolog in ''E. coli'')<br />
* ''[[yddD]]'' (no homolog in ''E. coli'')<br />
* ''[[yddF]]'' (no homolog in ''E. coli'')<br />
* ''[[yddG]]'' (no homolog in ''E. coli'')<br />
* ''[[yddI]]'' (no homolog in ''E. coli'')<br />
* ''[[yddJ]]'' (no homolog in ''E. coli'')<br />
* ''[[yddK]]'' (no homolog in ''E. coli'')<br />
* ''[[yddM]]'' (no homolog in ''E. coli'')<br />
* ''[[yddQ]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG12378 ''yecD''] (function unknown) in ''E. Coli''<br />
* ''[[yddR]]'' (no homolog in ''E. coli'')<br />
* ''[[yddT]]'' (no homolog in ''E. coli'')<br />
* ''[[ydeA]]'' (no homolog in ''E. coli'')<br />
* ''[[ydeD]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11688 ''yicL''] (function unknown) in ''E. Coli''<br />
* ''[[ydeH]]'' (no homolog in ''E. coli'')<br />
* ''[[ydeI]]'' (no homolog in ''E. coli'')<br />
* ''[[ydeJ]]'' (no homolog in ''E. coli'')<br />
* ''[[ydeK]]'' (no homolog in ''E. coli'')<br />
* ''[[ydeM]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G6708 ''paaZ (maoC)''] (function unknown) in ''E. Coli''<br />
* ''[[ydeN]]'' (no homolog in ''E. coli'')<br />
* ''[[ydeO]]'' (no homolog in ''E. coli'')<br />
* ''[[ydfC]]''similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11141 ''yedA''] (function unknown) in ''E. Coli''<br />
* ''[[ydfE]]'' (no homolog in ''E. coli'')<br />
* ''[[ydfF]]'' (no homolog in ''E. coli'')<br />
* ''[[ydfG]]''similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G6948 ''ynjA''] (function unknown) in ''E. Coli''<br />
* ''[[ydfK]]'' (no homolog in ''E. coli'')<br />
* ''[[ydgC]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG12301 ''rutR (ycdC)''] in ''E. Coli''<br />
* ''[[ydgD]]''(no homolog in ''E. coli'')<br />
* ''[[ydgE]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7269 ''ypeA''](function unknown) in ''E. Coli''<br />
* ''[[ydhB]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11144 ''yfcA''](function unknown) in ''E. Coli''<br />
* ''[[ydhH]]'' (no homolog in ''E. coli'')<br />
* ''[[ydhI]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7269 ''ypeA''](function unknown) in ''E. Coli''<br />
* ''[[ydhJ]]'' (no homolog in ''E. coli'')<br />
* ''[[ydiB]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11757 ''yjeE''](function unknown) in ''E. Coli''<br />
* ''[[ydiK]]'' (no homolog in ''E. coli'')<br />
* ''[[ydiL]]'' (no homolog in ''E. coli'')<br />
* ''[[ydiM]]'' (no homolog in ''E. coli'')<br />
* ''[[ydjB]]'' (no homolog in ''E. coli'')<br />
* ''[[ydjC]]'' (no homolog in ''E. coli'')<br />
* ''[[ydjG]]'' (no homolog in ''E. coli'')<br />
* ''[[ydjH]]'' (no homolog in ''E. coli'')<br />
* ''[[ydjI]]'' (no homolog in ''E. coli'')<br />
* ''[[ydjJ]]'' (no homolog in ''E. coli'')<br />
* ''[[ydjN]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzA]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzE]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11688 ''yicL''](function unknown) in ''E. Coli''<br />
* ''[[ydzH]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzJ]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzK]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzL]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzM]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzN]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzO]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzP]]'' (no homolog in ''E. coli'')<br />
* ''[[ydzQ]]'' (no sequence in SubtiWiki)<br />
* ''[[ydzR]]'' (no sequence in SubtiWiki)<br />
* ''[[ydzU]]'' (no sequence in SubtiWiki)<br />
* ''[[ydzV]]'' (no sequence in SubtiWiki)<br />
* ''[[ydzX]]'' (no sequence in SubtiWiki)<br />
* ''[[yeaC]]'' (no homolog in ''E. coli'')<br />
* ''[[yeaD]]'' (no homolog in ''E. coli'')<br />
* ''[[yebA]]'' (no homolog in ''E. coli'')<br />
* ''[[yebD]]'' (no homolog in ''E. coli'')<br />
* ''[[yebE]]'' (no homolog in ''E. coli'')<br />
* ''[[yebG]]'' (no homolog in ''E. coli'')<br />
* ''[[yeeA]]'' (no homolog in ''E. coli'')<br />
* ''[[yeeB]]'' (no homolog in ''E. coli'')<br />
* ''[[yeeC]]'' (no homolog in ''E. coli'')<br />
* ''[[yeeD]]'' (no homolog in ''E. coli'')<br />
* ''[[yeeF]]'' (no homolog in ''E. coli'')<br />
* ''[[yeeG]]'' (no homolog in ''E. coli'')<br />
* ''[[yeeI]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7068 ''yeeN''](function unknown) in ''E. Coli''<br />
* ''[[yerC]]'' (no homolog in ''E. coli'')<br />
* ''[[yerH]]'' (no homolog in ''E. coli'')<br />
* ''[[yerI]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11831 ''rdoA (yihE, orfA)''](function unknown) in ''E. Coli''<br />
* ''[[yesE]]'' (no homolog in ''E. coli'')<br />
* ''[[yesF]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G7868 ''ytfG (QOR2)''](function unknown) in ''E. Coli''<br />
* ''[[yesL]]'' (no homolog in ''E. coli'')<br />
* ''[[yesU]]'' (no homolog in ''E. coli'')<br />
* ''[[yetA]]'' (no homolog in ''E. coli'')<br />
* ''[[yetF]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G6469 ''ycaP''](function unknown) in ''E. Coli''<br />
* ''[[yetH]]'' (no homolog in ''E. coli'')<br />
* ''[[yetJ]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11113 ''yccA''](function unknown) in ''E. Coli''<br />
* ''[[yetK]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11639 ''eamA (ydeD)''](function unknown) in ''E. Coli''<br />
* ''[[yetN]]'' (no homolog in ''E. coli'')<br />
* ''[[yezA]]'' (no homolog in ''E. coli'')<br />
* ''[[yezD]]'' (no homolog in ''E. coli'')<br />
* ''[[yezF]]'' (no sequence in SubtiWiki)<br />
* ''[[yezG]]'' (no sequence in SubtiWiki)<br />
* ''[[yfhB]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11825 ''yddE''](function unknown) in ''E. Coli''<br />
* ''[[yfhC]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=EG11134 ''ydjA''](function unknown) in ''E. Coli''<br />
* ''[[yfhG]]'' (no homolog in ''E. coli'')<br />
* ''[[yfhH]]'' (no homolog in ''E. coli'')<br />
* ''[[yfhJ]]'' (no homolog in ''E. coli'')<br />
* ''[[yfhO]]'' (no homolog in ''E. coli'')<br />
* ''[[yfhP]]'' (no homolog in ''E. coli'')<br />
* ''[[yfhS]]'' (no homolog in ''E. coli'')<br />
* ''[[yfiH]]'' (no homolog in ''E. coli'')<br />
* ''[[yfiI]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G6868 ''ydgJ''](function unknown) in ''E. Coli''<br />
* ''[[yfiQ]]'' (no homolog in ''E. coli'')<br />
* ''[[yfjA]]'' (no homolog in ''E. coli'')<br />
* ''[[yfjB]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=GENE&object=G6695 ''stfR''](function unknown) in ''E. Coli''<br />
* ''[[yfjC]]'' (no homolog in ''E. coli'')<br />
* ''[[yfjD]]'' (no homolog in ''E. coli'')<br />
* ''[[yfjE]]''<br />
* ''[[yfjF]]''<br />
* ''[[yfjM]]''<br />
* ''[[yfjT]]''<br />
* ''[[yfkA]]''<br />
* ''[[yfkK]]''<br />
* ''[[yflB]]''<br />
* ''[[yflD]]''<br />
* ''[[yflI]]''<br />
* ''[[yflJ]]''<br />
* ''[[yflK]]''<br />
* ''[[yflN]]''<br />
* ''[[yflP]]''<br />
* ''[[yfmA]]''<br />
* ''[[yfmB]]''<br />
* ''[[yfmG]]''<br />
* ''[[yfmH]]''<br />
* ''[[yfmK]]''<br />
* ''[[yfmN]]''<br />
* ''[[yfmQ]]''<br />
* ''[[yfnB]]''<br />
* ''[[yfzA]]''<br />
* ''[[ygaB]]''<br />
* ''[[ygaC]]''<br />
* ''[[ygaE]]''<br />
* ''[[ygaJ]]''<br />
* ''[[ygaN]]''<br />
* ''[[ygaO]]''<br />
* ''[[ygxA]]''<br />
* ''[[ygzA]]''<br />
* ''[[ygzB]]''<br />
* ''[[ygzC]]''<br />
* ''[[ygzD]]''<br />
* ''[[yhaH]]''<br />
* ''[[yhaI]]''<br />
* ''[[yhaJ]]''<br />
* ''[[yhaO]]''<br />
* ''[[yhaY]]''<br />
* ''[[yhbB]]''<br />
* ''[[yhbD]]''<br />
* ''[[yhbE]]''<br />
* ''[[yhbF]]''<br />
* ''[[yhbJ]]''<br />
* ''[[yhcC]]''<br />
* ''[[yhcD]]''<br />
* ''[[yhcT]]''<br />
* ''[[yhcU]]''<br />
* ''[[yhcX]]''<br />
* ''[[yhdB]]''<br />
* ''[[yhdC]]''<br />
* ''[[yhdJ]]''<br />
* ''[[yhdS]]''<br />
* ''[[yhdU]]''<br />
* ''[[yhdV]]''<br />
* ''[[yhdX]]''<br />
* ''[[yheA]]''<br />
* ''[[yheB]]''<br />
* ''[[yheE]]''<br />
* ''[[yheF]]''<br />
* ''[[yheG]]''<br />
* ''[[yheJ]]''<br />
* ''[[yhfA]]''<br />
* ''[[yhfC]]''<br />
* ''[[yhfD]]''<br />
* ''[[yhfF]]''<br />
* ''[[yhfH]]''<br />
* ''[[yhfI]]''<br />
* ''[[yhfK]]''<br />
* ''[[yhfN]]''<br />
* ''[[yhgB]]''<br />
* ''[[yhgE]]''<br />
* ''[[yhjA]]''<br />
* ''[[yhjC]]''<br />
* ''[[yhjD]]''<br />
* ''[[yhjE]]''<br />
* ''[[yhjH]]''<br />
* ''[[yhjN]]''<br />
* ''[[yhjQ]]''<br />
* ''[[yhzB]]''<br />
* ''[[yhzC]]''<br />
* ''[[yhzD]]''<br />
* ''[[yhzF]]''<br />
* ''[[yhzG]]''<br />
* ''[[yisB]]''<br />
* ''[[yisJ]]''<br />
* ''[[yisL]]''<br />
* ''[[yisN]]''<br />
* ''[[yisQ]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=ENZYME&object=YEEO-MONOMER ''yeeO''] from ''E. coli''<br />
* ''[[yisU]]''<br />
* ''[[yisX]]''<br />
* ''[[yitE]]''<br />
* ''[[yitH]]''<br />
* ''[[yitI]]''<br />
* ''[[yitK]]''<br />
* ''[[yitL]]''<br />
* ''[[yitM]]''<br />
* ''[[yitO]]''<br />
* ''[[yitP]]''<br />
* ''[[yitQ]]''<br />
* ''[[yitR]]''<br />
* ''[[yitS]]''<br />
* ''[[yitU]]''<br />
* ''[[yitV]]''<br />
* ''[[yitW]]''<br />
* ''[[yizA]]''<br />
* ''[[yizB]]''<br />
* ''[[yizC]]''<br />
* ''[[yizD]]''<br />
* ''[[yjaU]]''<br />
* ''[[yjaZ]]''<br />
* ''[[yjbE]]''<br />
* ''[[yjbK]]''<br />
* ''[[yjbL]]''<br />
* ''[[yjcF]]''<br />
* ''[[yjcH]]''<br />
* ''[[yjcL]]''<br />
* ''[[yjcM]]''<br />
* ''[[yjcN]]''<br />
* ''[[yjcO]]''<br />
* ''[[yjcP]]''<br />
* ''[[yjcQ]]''<br />
* ''[[yjcR]]''<br />
* ''[[yjcS]]''<br />
* ''[[yjcZ]]''<br />
* ''[[yjdB]]''<br />
* ''[[yjdF]]''<br />
* ''[[yjdG]]''<br />
* ''[[yjdJ]]''<br />
* ''[[yjfB]]''<br />
* ''[[yjfC]]''<br />
* ''[[yjgA]]''<br />
* ''[[yjhA]]''<br />
* ''[[yjiA]]''<br />
* ''[[yjjA]]''<br />
* ''[[yjlB]]''<br />
* ''[[yjlC]]''<br />
* ''[[yjnA]]''<br />
* ''[[yjoA]]''<br />
* ''[[yjpA]]''<br />
* ''[[yjqA]]''<br />
* ''[[yjqB]]''<br />
* ''[[yjzB]]''<br />
* ''[[yjzC]]''<br />
* ''[[yjzD]]''<br />
* ''[[yjzF]]''<br />
* ''[[yjzG]]''<br />
* ''[[yjzH]]''<br />
* ''[[yjzI]]''<br />
* ''[[yjzK]]''<br />
* ''[[ykaA]]''<br />
* ''[[ykcB]]''<br />
* ''[[ykjA]]''<br />
* ''[[ykkA]]''<br />
* ''[[ykoA]]''<br />
* ''[[ykoI]]''<br />
* ''[[ykoJ]]''<br />
* ''[[ykoL]]''<br />
* ''[[ykoN]]''<br />
* ''[[ykoP]]''<br />
* ''[[ykoQ]]''<br />
* ''[[ykoS]]''<br />
* ''[[ykoY]]''<br />
* ''[[ykpC]]''<br />
* ''[[ykqA]]''<br />
* ''[[ykrA]]''<br />
* ''[[ykrP]]''<br />
* ''[[yktA]]''<br />
* ''[[yktB]]''<br />
* ''[[yktC]]''<br />
* ''[[yktD]]''<br />
* ''[[ykuE]]''<br />
* ''[[ykuH]]''<br />
* ''[[ykuJ]]''<br />
* ''[[ykuK]]''<br />
* ''[[ykuL]]''<br />
* ''[[ykuO]]''<br />
* ''[[ykuS]]''<br />
* ''[[ykvA]]''<br />
* ''[[ykvN]]''<br />
* ''[[ykvR]]''<br />
* ''[[ykvS]]''<br />
* ''[[ykwB]]''<br />
* ''[[ykwD]]''<br />
* ''[[ykyA]]''<br />
* ''[[ykyB]]''<br />
* ''[[ykzB]]''<br />
* ''[[ykzC]]''<br />
* ''[[ykzD]]''<br />
* ''[[ykzE]]''<br />
* ''[[ykzH]]''<br />
* ''[[ykzN]]''<br />
* ''[[ykzO]]''<br />
* ''[[ykzP]]''<br />
* ''[[ykzQ]]''<br />
* ''[[ykzR]]''<br />
* ''[[ykzS]]''<br />
* ''[[ykzT]]''<br />
* ''[[ykzU]]''<br />
* ''[[ykzV]]''<br />
* ''[[ylaA]]''<br />
* ''[[ylaB]]''<br />
* ''[[ylaE]]''<br />
* ''[[ylaF]]''<br />
* ''[[ylaH]]''<br />
* ''[[ylaI]]''<br />
* ''[[ylaL]]''<br />
* ''[[ylaN]]''<br />
* ''[[ylbA]]''<br />
* ''[[ylbG]]''<br />
* ''[[ylbK]]''<br />
* ''[[ylbL]]''<br />
* ''[[ylbM]]''<br />
* ''[[ylbN]]''<br />
* ''[[ylbP]]''<br />
* ''[[ylmC]]''<br />
* ''[[ylmD]]''<br />
* ''[[ylmG]]''<br />
* ''[[ylmH]]''<br />
* ''[[yloC]]''<br />
* ''[[yloU]]''<br />
* ''[[yloV]]''<br />
* ''[[ylqB]]''<br />
* ''[[ylqC]]''<br />
* ''[[ylqD]]''<br />
* ''[[ylqG]]''<br />
* ''[[ylxF]]''<br />
* ''[[ylxM]]''<br />
* ''[[ylxR]]''<br />
* ''[[ylyA]]''<br />
* ''[[ylzH]]''<br />
* ''[[ylzI]]''<br />
* ''[[ylzJ]]''<br />
* ''[[ymaB]]''<br />
* ''[[ymaC]]''<br />
* ''[[ymaD]]''<br />
* ''[[ymaE]]''<br />
* ''[[ymaF]]''<br />
* ''[[ymcC]]''<br />
* ''[[ymfF]]''<br />
* ''[[ymfJ]]''<br />
* ''[[ymxH]]''<br />
* ''[[ymzA]]''<br />
* ''[[ymzC]]''<br />
* ''[[ymzD]]''<br />
* ''[[ynaB]]''<br />
* ''[[ynaC]]''<br />
* ''[[ynaE]]''<br />
* ''[[ynaF]]''<br />
* ''[[ynaG]]''<br />
* ''[[yncE]]''<br />
* ''[[yncM]]''<br />
* ''[[yndB]]''<br />
* ''[[yndG]]''<br />
* ''[[yndH]]''<br />
* ''[[yndJ]]''<br />
* ''[[yndK]]''<br />
* ''[[yndM]]''<br />
* ''[[yneJ]]''<br />
* ''[[yneK]]''<br />
* ''[[yneP]]''<br />
* ''[[yneQ]]''<br />
* ''[[yneR]]''<br />
* ''[[yneT]]''<br />
* ''[[ynfC]]''<br />
* ''[[ynfE]]''<br />
* ''[[yngA]]''<br />
* ''[[yngHB]]''<br />
* ''[[yngK]]''<br />
* ''[[yngL]]''<br />
* ''[[ynxB]]''<br />
* ''[[ynzB]]''<br />
* ''[[ynzC]]''<br />
* ''[[ynzE]]''<br />
* ''[[ynzF]]''<br />
* ''[[ynzG]]''<br />
* ''[[ynzI]]''<br />
* ''[[ynzJ]]''<br />
* ''[[ynzK]]''<br />
* ''[[ynzL]]''<br />
* ''[[yoaK]]''<br />
* ''[[yoaM]]''<br />
* ''[[yoaO]]''<br />
* ''[[yoaP]]''<br />
* ''[[yoaQ]]''<br />
* ''[[yoaS]]''<br />
* ''[[yoaT]]''<br />
* ''[[yoaZ]]''<br />
* ''[[yobA]]''<br />
* ''[[yobB]]''<br />
* ''[[yobF]]''<br />
* ''[[yobI]]''<br />
* ''[[yobK]]''<br />
* ''[[yobL]]''<br />
* ''[[yobM]]''<br />
* ''[[yobO]]''<br />
* ''[[yobR]]''<br />
* ''[[yobS]]''<br />
* ''[[yobT]]''<br />
* ''[[yobU]]''<br />
* ''[[yobV]]''<br />
* ''[[yocA]]''<br />
* ''[[yocC]]''<br />
* ''[[yocM]]''<br />
* ''[[yodA]]''<br />
* ''[[yodL]]''<br />
* ''[[yodM]]''<br />
* ''[[yodN]]''<br />
* ''[[yoeA]]''<br />
* ''[[yoeC]]''<br />
* ''[[yoeD]]''<br />
* ''[[yogA]]''<br />
* ''[[yojB]]''<br />
* ''[[yojC]]''<br />
* ''[[yojE]]''<br />
* ''[[yojF]]''<br />
* ''[[yojI]]''<br />
* ''[[yojO]]''<br />
* ''[[yokH]]''<br />
* ''[[yolD]]''<br />
* ''[[yomL]]''<br />
* ''[[yosZ]]''<br />
* ''[[youB]]''<br />
* ''[[yoyA]]''<br />
* ''[[yoyB]]''<br />
* ''[[yoyC]]''<br />
* ''[[yoyD]]''<br />
* ''[[yoyE]]''<br />
* ''[[yoyF]]''<br />
* ''[[yoyG]]''<br />
* ''[[yozB]]''<br />
* ''[[yozC]]''<br />
* ''[[yozD]]''<br />
* ''[[yozE]]''<br />
* ''[[yozF]]''<br />
* ''[[yozH]]''<br />
* ''[[yozI]]''<br />
* ''[[yozJ]]''<br />
* ''[[yozL]]''<br />
* ''[[yozM]]''<br />
* ''[[yozN]]''<br />
* ''[[yozS]]''<br />
* ''[[yozT]]''<br />
* ''[[yozU]]''<br />
* ''[[yozV]]''<br />
* ''[[yozW]]''<br />
* ''[[yozX]]''<br />
* ''[[yozY]]''<br />
* ''[[yozZ]]''<br />
* ''[[ypbB]]''<br />
* ''[[ypbD]]''<br />
* ''[[ypbE]]''<br />
* ''[[ypbF]]''<br />
* ''[[ypbS]]''<br />
* ''[[ypdP]]''<br />
* ''[[ypeP]]''<br />
* ''[[ypeQ]]''<br />
* ''[[ypfA]]''<br />
* ''[[ypgQ]]''<br />
* ''[[ypgR]]''<br />
* ''[[yphE]]''<br />
* ''[[yphF]]''<br />
* ''[[ypiA]]''<br />
* ''[[ypiB]]''<br />
* ''[[ypiF]]''<br />
* ''[[ypiP]]''<br />
* ''[[ypjA]]''<br />
* ''[[ypjC]]''<br />
* ''[[ypjP]]''<br />
* ''[[ypjQ]]''<br />
* ''[[ypkP]]''<br />
* ''[[ypmA]]''<br />
* ''[[ypmB]]''<br />
* ''[[ypmP]]''<br />
* ''[[ypmR]]''<br />
* ''[[ypmS]]''<br />
* ''[[ypmT]]''<br />
* ''[[ypoC]]''<br />
* ''[[yppC]]''<br />
* ''[[yppD]]''<br />
* ''[[yppE]]''<br />
* ''[[yppF]]''<br />
* ''[[yppG]]''<br />
* ''[[yprB]]''<br />
* ''[[ypsA]]''<br />
* ''[[yptA]]''<br />
* ''[[ypuB]]''<br />
* ''[[ypuE]]''<br />
* ''[[ypzC]]''<br />
* ''[[ypzD]]''<br />
* ''[[ypzE]]''<br />
* ''[[ypzF]]''<br />
* ''[[ypzG]]''<br />
* ''[[ypzH]]''<br />
* ''[[ypzI]]''<br />
* ''[[ypzJ]]''<br />
* ''[[yqeB]]''<br />
* ''[[yqeD]]''<br />
* ''[[yqeF]]''<br />
* ''[[yqeG]]''<br />
* ''[[yqeK]]''<br />
* ''[[yqeL]]''<br />
* ''[[yqeM]]''<br />
* ''[[yqeY]]''<br />
* ''[[yqfF]]''<br />
* ''[[yqfO]]''<br />
-----------<br />
* ''[[yqfT]]''<br />
* ''[[yqfW]]''<br />
* ''[[yqgA]]''<br />
* ''[[yqgB]]''<br />
* ''[[yqgC]]''<br />
* ''[[yqgE]]''<br />
* ''[[yqgL]]''<br />
* ''[[yqgM]]''<br />
* ''[[yqgO]]''<br />
* ''[[yqgU]]''<br />
* ''[[yqgV]]''<br />
* ''[[yqgW]]''<br />
* ''[[yqgX]]''<br />
* ''[[yqgY]]''<br />
* ''[[yqhL]]''<br />
* ''[[yqhO]]''<br />
* ''[[yqhR]]''<br />
* ''[[yqhV]]''<br />
* ''[[yqhY]]''<br />
* ''[[yqiH]]''<br />
* ''[[yqiW]]''<br />
* ''[[yqjA]]''<br />
* ''[[yqjB]]''<br />
* ''[[yqjC]]''<br />
* ''[[yqjF]]''<br />
* ''[[yqjP]]''<br />
* ''[[yqjT]]''<br />
* ''[[yqjU]]''<br />
* ''[[yqjX]]''<br />
* ''[[yqjZ]]''<br />
* ''[[yqkA]]''<br />
* ''[[yqkB]]''<br />
* ''[[yqkC]]''<br />
* ''[[yqkD]]''<br />
* ''[[yqkE]]''<br />
* ''[[yqkK]]''<br />
* ''[[yqxD]]''<br />
* ''[[yqxK]]''<br />
* ''[[yqzD]]''<br />
* ''[[yqzE]]''<br />
* ''[[yqzF]]''<br />
* ''[[yqzH]]''<br />
* ''[[yqzK]]''<br />
* ''[[yqzL]]''<br />
* ''[[yqzM]]''<br />
* ''[[yraH]]''<br />
* ''[[yraI]]''<br />
* ''[[yraJ]]''<br />
* ''[[yraK]]''<br />
* ''[[yraL]]''<br />
* ''[[yraM]]''<br />
* ''[[yrbC]]'', similar to [http://ecocyc.org/ECOLI/NEW-IMAGE?type=ENZYME&object=EG11137-MONOMER ''yebC''] from ''E. coli''<br />
* ''[[yrbF]]''<br />
* ''[[yrbG]]''<br />
* ''[[yrdA]]''<br />
* ''[[yrdB]]''<br />
* ''[[yrdC]]''<br />
* ''[[yrdK]]''<br />
* ''[[yrdN]]''<br />
* ''[[yrdR]]''<br />
* ''[[yrhC]]''<br />
* ''[[yrhD]]''<br />
* ''[[yrhE]]''<br />
* ''[[yrhF]]''<br />
* ''[[yrkB]]''<br />
* ''[[yrkD]]''<br />
* ''[[yrkE]]''<br />
* ''[[yrkF]]''<br />
* ''[[yrkG]]''<br />
* ''[[yrkH]]''<br />
* ''[[yrkI]]''<br />
* ''[[yrkJ]]''<br />
* ''[[yrkK]]''<br />
* ''[[yrkM]]''<br />
* ''[[yrkN]]''<br />
* ''[[yrkO]]''<br />
* ''[[yrkR]]''<br />
* ''[[yrkS]]''<br />
* ''[[yrpD]]''<br />
* ''[[yrrB]]''<br />
* ''[[yrrI]]''<br />
* ''[[yrrK]]''<br />
* ''[[yrvC]]''<br />
* ''[[yrvD]]''<br />
* ''[[yrvM]]''<br />
* ''[[yrvN]]''<br />
* ''[[yrzA]]''<br />
* ''[[yrzB]]''<br />
* ''[[yrzE]]''<br />
* ''[[yrzF]]''<br />
* ''[[yrzH]]''<br />
* ''[[yrzI]]''<br />
* ''[[yrzK]]''<br />
* ''[[yrzL]]''<br />
* ''[[yrzM]]''<br />
* ''[[yrzN]]''<br />
* ''[[yrzO]]''<br />
* ''[[yrzP]]''<br />
* ''[[yrzQ]]''<br />
* ''[[yrzR]]''<br />
* ''[[yrzS]]''<br />
* ''[[yrzT]]''<br />
* ''[[ysaA]]''<br />
* ''[[ysbA]]''<br />
* ''[[yscA]]''<br />
* ''[[yscB]]''<br />
* ''[[ysdA]]''<br />
* ''[[ysfB]]''<br />
* ''[[ysfC]]''<br />
* ''[[ysfE]]''<br />
* ''[[yshB]]''<br />
* ''[[yshE]]''<br />
* ''[[yslB]]''<br />
* ''[[ysmA]]''<br />
* ''[[ysnB]]''<br />
* ''[[ysoA]]''<br />
* ''[[ysxB]]''<br />
* ''[[ysxD]]''<br />
* ''[[yszA]]''<br />
* ''[[ytaF]]''<br />
* ''[[ytaP]]''<br />
* ''[[ytbQ]]''<br />
* ''[[ytcD]]''<br />
* ''[[ytcG]]''<br />
* ''[[ytcJ]]''<br />
* ''[[yteS]]''<br />
* ''[[yteT]]''<br />
* ''[[yteU]]''<br />
* ''[[ytfP]]''<br />
* ''[[ytkA]]''<br />
* ''[[ytlQ]]''<br />
* ''[[ytlR]]''<br />
* ''[[ytmA]]''<br />
* ''[[ytmB]]''<br />
* ''[[ytmI]]''<br />
* ''[[ytmP]]''<br />
* ''[[ytnI]]''<br />
* ''[[ytnL]]''<br />
* ''[[ytnM]]''<br />
* ''[[ytoI]]''<br />
* ''[[ytoQ]]''<br />
* ''[[ytpI]]''<br />
* ''[[ytpQ]]''<br />
* ''[[ytqA]]''<br />
* ''[[ytqB]]''<br />
* ''[[ytrG]]''<br />
* ''[[ytsP]]''<br />
* ''[[yttA]]''<br />
* ''[[yttP]]''<br />
* ''[[ytvB]]''<br />
* ''[[ytwF]]''<br />
* ''[[ytwI]]''<br />
* ''[[ytxB]]''<br />
* ''[[ytxK]]''<br />
* ''[[ytzA]]''<br />
* ''[[ytzB]]''<br />
* ''[[ytzC]]''<br />
* ''[[ytzD]]''<br />
* ''[[ytzH]]''<br />
* ''[[ytzI]]''<br />
* ''[[ytzJ]]''<br />
* ''[[ytzK]]''<br />
* ''[[ytzL]]''<br />
* ''[[yuaD]]''<br />
* ''[[yuaE]]''<br />
* ''[[yubA]]''<br />
* ''[[yubF]]''<br />
* ''[[yueC]]''<br />
* ''[[yueE]]''<br />
* ''[[yueF]]''<br />
* ''[[yueG]]''<br />
* ''[[yueH]]''<br />
* ''[[yueI]]''<br />
* ''[[yufK]]''<br />
* ''[[yufS]]''<br />
* ''[[yugE]]''<br />
* ''[[yugI]]''<br />
* ''[[yugM]]''<br />
* ''[[yugN]]''<br />
* ''[[yugP]]''<br />
* ''[[yuiA]]''<br />
* ''[[yuiB]]''<br />
* ''[[yuiD]]''<br />
* ''[[yuiF]]''<br />
* ''[[yukB]]''<br />
* ''[[yukC]]''<br />
* ''[[yukD]]''<br />
* ''[[yukE]]''<br />
* ''[[yukF]]''<br />
* ''[[yukJ]]''<br />
* ''[[yulD]]''<br />
* ''[[yulF]]''<br />
* ''[[yumB]]''<br />
* ''[[yunC]]''<br />
* ''[[yunD]]''<br />
* ''[[yunE]]''<br />
* ''[[yunF]]''<br />
* ''[[yunG]]''<br />
* ''[[yurQ]]''<br />
* ''[[yurZ]]''<br />
* ''[[yusD]]''<br />
* ''[[yusF]]''<br />
* ''[[yusG]]''<br />
* ''[[yusU]]''<br />
* ''[[yusW]]''<br />
* ''[[yutC]]''<br />
* ''[[yutD]]''<br />
* ''[[yutE]]''<br />
* ''[[yutG]]''<br />
* ''[[yutH]]''<br />
* ''[[yutI]]''<br />
* ''[[yuxH]]''<br />
* ''[[yuxK]]''<br />
* ''[[yuxN]]''<br />
* ''[[yuxO]]''<br />
* ''[[yuzB]]''<br />
* ''[[yuzD]]''<br />
* ''[[yuzE]]''<br />
* ''[[yuzF]]''<br />
* ''[[yuzG]]''<br />
* ''[[yuzH]]''<br />
* ''[[yuzI]]''<br />
* ''[[yuzJ]]''<br />
* ''[[yuzK]]''<br />
* ''[[yuzL]]''<br />
* ''[[yuzM]]''<br />
* ''[[yuzN]]''<br />
* ''[[yvaC]]''<br />
* ''[[yvaD]]''<br />
* ''[[yvaF]]''<br />
* ''[[yvaV]]''<br />
* ''[[yvbF]]''<br />
* ''[[yvbG]]''<br />
* ''[[yvbH]]''<br />
* ''[[yvbI]]''<br />
* ''[[yvbJ]]''<br />
* ''[[yvbK]]''<br />
* ''[[yvbX]]''<br />
* ''[[yvcB]]''<br />
* ''[[yvcD]]''<br />
* ''[[yvcN]]''<br />
* ''[[yvcT]]''<br />
* ''[[yvdC]]''<br />
* ''[[yvdJ]]''<br />
* ''[[yveF]]''<br />
* ''[[yveG]]''<br />
* ''[[yvfG]]''<br />
* ''[[yviE]]''<br />
* ''[[yvjA]]''<br />
* ''[[yvkN]]''<br />
* ''[[yvmB]]''<br />
* ''[[yvnA]]''<br />
* ''[[yvnB]]''<br />
* ''[[yvoD]]''<br />
* ''[[yvoE]]''<br />
* ''[[yvpB]]''<br />
* ''[[yvrP]]''<br />
* ''[[yvsG]]''<br />
* ''[[yvyE]]''<br />
* ''[[yvzA]]''<br />
* ''[[yvzC]]''<br />
* ''[[yvzE]]''<br />
* ''[[yvzF]]''<br />
* ''[[yvzH]]''<br />
* ''[[yvzI]]''<br />
* ''[[yvzJ]]''<br />
* ''[[ywaF]]''<br />
* ''[[ywbB]]''<br />
* ''[[ywbD]]''<br />
* ''[[ywbE]]''<br />
* ''[[ywbF]]''<br />
* ''[[ywbG]]''<br />
* ''[[ywbH]]''<br />
* ''[[ywcI]]''<br />
* ''[[ywdA]]''<br />
* ''[[ywdC]]''<br />
* ''[[ywdD]]''<br />
* ''[[ywdE]]''<br />
* ''[[ywdF]]''<br />
* ''[[ywdI]]''<br />
* ''[[yweA]]''<br />
* ''[[ywfM]]''<br />
* ''[[ywfO]]''<br />
* ''[[ywgA]]''<br />
* ''[[ywgB]]''<br />
* ''[[ywhC]]''<br />
* ''[[ywhD]]''<br />
* ''[[ywhH]]''<br />
* ''[[ywhK]]''<br />
* ''[[ywhL]]''<br />
* ''[[ywiB]]''<br />
* ''[[ywiC]]''<br />
* ''[[ywjB]]''<br />
* ''[[ywjG]]''<br />
* ''[[ywkB]]''<br />
* ''[[ywkD]]''<br />
* ''[[ywkF]]''<br />
* ''[[ywlA]]''<br />
* ''[[ywlD]]''<br />
* ''[[ywlG]]''<br />
* ''[[ywmA]]''<br />
* ''[[ywmB]]''<br />
* ''[[ywmC]]''<br />
* ''[[ywmD]]''<br />
* ''[[ywnA]]''<br />
* ''[[ywnB]]''<br />
* ''[[ywnC]]''<br />
* ''[[ywnF]]''<br />
* ''[[ywnG]]''<br />
* ''[[ywoB]]''<br />
* ''[[ywoC]]''<br />
* ''[[ywoF]]''<br />
* ''[[ywpE]]''<br />
* ''[[ywpF]]''<br />
* ''[[ywpG]]''<br />
* ''[[ywpJ]]''<br />
* ''[[ywqB]]''<br />
* ''[[ywqG]]''<br />
* ''[[ywqH]]''<br />
* ''[[ywqI]]''<br />
* ''[[ywqJ]]''<br />
* ''[[ywqK]]''<br />
* ''[[ywqN]]''<br />
* ''[[ywqO]]''<br />
* ''[[ywrD]]''<br />
* ''[[ywrF]]''<br />
* ''[[ywsA]]''<br />
* ''[[ywtE]]''<br />
* ''[[ywzB]]''<br />
* ''[[ywzC]]''<br />
* ''[[ywzD]]''<br />
* ''[[ywzE]]''<br />
* ''[[ywzF]]''<br />
* ''[[ywzG]]''<br />
* ''[[ywzH]]''<br />
* ''[[yxaC]]''<br />
* ''[[yxaI]]''<br />
* ''[[yxaJ]]''<br />
* ''[[yxbB]]''<br />
* ''[[yxbC]]''<br />
* ''[[yxbD]]''<br />
* ''[[yxbF]]''<br />
* ''[[yxcA]]''<br />
* ''[[yxcD]]''<br />
* ''[[yxcE]]''<br />
* ''[[yxeA]]''<br />
* ''[[yxeC]]''<br />
* ''[[yxeF]]''<br />
* ''[[yxeG]]''<br />
* ''[[yxeH]]''<br />
* ''[[yxeJ]]''<br />
* ''[[yxeL]]''<br />
* ''[[yxeQ]]''<br />
* ''[[yxiB]]''<br />
* ''[[yxiC]]''<br />
* ''[[yxiD]]''<br />
* ''[[yxiE]]''<br />
* ''[[yxiF]]''<br />
* ''[[yxiG]]''<br />
* ''[[yxiH]]''<br />
* ''[[yxiI]]''<br />
* ''[[yxiJ]]''<br />
* ''[[yxiK]]''<br />
* ''[[yxiO]]''<br />
* ''[[yxiP]]''<br />
* ''[[yxjB]]''<br />
* ''[[yxjN]]''<br />
* ''[[yxkA]]''<br />
* ''[[yxkC]]''<br />
* ''[[yxkD]]''<br />
* ''[[yxkF]]''<br />
* ''[[yxkH]]''<br />
* ''[[yxkI]]''<br />
* ''[[yxnB]]''<br />
* ''[[yxxB]]''<br />
* ''[[yxxD]]''<br />
* ''[[yxxE]]''<br />
* ''[[yxxF]]''<br />
* ''[[yxxG]]''<br />
* ''[[yxzC]]''<br />
* ''[[yxzG]]''<br />
* ''[[yxzI]]''<br />
* ''[[yxzJ]]''<br />
* ''[[yxzK]]''<br />
* ''[[yxzL]]''<br />
* ''[[yyaB]]''<br />
* ''[[yyaF]]''<br />
* ''[[yyaH]]''<br />
* ''[[yyaJ]]''<br />
* ''[[yyaK]]''<br />
* ''[[yyaL]]''<br />
* ''[[yyaM]]''<br />
* ''[[yyaO]]''<br />
* ''[[yyaP]]''<br />
* ''[[yyaQ]]''<br />
* ''[[yyaS]]''<br />
* ''[[yyaT]]''<br />
* ''[[yybB]]''<br />
* ''[[yybC]]''<br />
* ''[[yybD]]''<br />
* ''[[yybG]]''<br />
* ''[[yybH]]''<br />
* ''[[yybM]]''<br />
* ''[[yybN]]''<br />
* ''[[yybP]]''<br />
* ''[[yybS]]''<br />
* ''[[yycA]]''<br />
* ''[[yycC]]''<br />
* ''[[yycE]]''<br />
* ''[[yycO]]''<br />
* ''[[yycP]]''<br />
* ''[[yycQ]]''<br />
* ''[[yycS]]''<br />
* ''[[yydA]]''<br />
* ''[[yydB]]''<br />
* ''[[yydC]]''<br />
* ''[[yydD]]''<br />
* ''[[yyzB]]''<br />
* ''[[yyzF]]''<br />
* ''[[yyzG]]''<br />
* ''[[yyzH]]''<br />
* ''[[yyzI]]''<br />
* ''[[yyzJ]]''<br />
* ''[[yyzK]]''<br />
* ''[[yyzL]]''<br />
* ''[[yyzM]]''<br />
* ''[[yyzN]]''<br />
* ''[[yyzO]]''<br />
* ''[[zinT]]''<br />
<br />
=Back to [[categories]]=</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=139755
Main Page
2011-02-01T09:22:19Z
<p>Aschmei: </p>
<hr />
<div><big>Welcome to '''''Subti''Wiki'''! </big> - ''Bacillus subtilis'' annotation the "wiki" way!<br/><br />
[[File:Start_page_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/]]<br />
[[File:Playground_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Playground]]<br />
[[File:Wish_List_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Wish_List]]<br />
<br/><br />
<big>'''Contact:'''</big> [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br />
<br />
<br/><br />
<big>'''Upcoming events:'''</big> <br />
* '''March 14 - 16, 2011:''' The European [[BACELL meeting]] will take place in Göttingen, Germany. [mailto:jstuelk@gwdg.de contact], [[BACELL meeting|website]]<br />
* '''June 2011:''' The 16th International Conference on Bacilli (aka 6th International Conference on Gram-positive Microorganisms) will take place in lovely Tuscany, Italy. [http://www.grampositiveconference.org/index.html Conference website]<br />
<br/><br />
<big>'''News in ''Subti''Wiki:'''</big> <br />
* '''December 2010:''' the beta version of an interactive protein-protein interaction map is available [http://cellpublisher.gobics.de/subtinteract/interactionList/PtsH here] (just replace "PtsH" in the browser line by the protein of your interest)<br />
* '''December 2010:''' [http://cellpublisher.gobics.de/scp.html SubtiCellPublisher] allows the conversion of CellDesigner diagrams to navigatable presentations in the style of [[SubtiPathways]]<br />
* '''December 2010:''' all genes are linked to [[regulons]], and the pages of the [[regulons]] provide an overview on all genes that are members of this specific regulon.<br />
* '''December 2010:''' all genes/proteins are linked to [[categories]], and the pages of the [[categories]] provide an overview on all genes/proteins that are members of this specific category.<br />
* '''November 2010:''' a beta version of [http://subtiwiki.uni-goettingen.de/pathways/SubtInteract/demo_mitlinks/ SubtInteract] is online<br />
* '''August 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources], [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis], [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling], and [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] were uploaded to [[SubtiPathways]]<br />
* '''July 2010:''' A manually curated functional classification of ''Bacillus'' genes can be downloaded [http://www.subtiwiki.uni-goettingen.de/otherFiles/classification.zip here].<br />
* '''March 2010:''' novel [[plasmids]] for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, [[pGP1087]] and [[pGP1331]])<br />
* '''February 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_synthesis.html lipid biosynthesis], [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html fatty acid degradation], [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html control of biofilm formation] and [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html phosphorelay] were uploaded to [[SubtiPathways]]<br />
<br/><br />
{| border="0" cellpadding="1"<br />
|width="300"|<big>'''Genes''' (examples)</big><br />
|width="300"|<big>'''Additional pages'''</big><br />
|- style="height:20px" <br />
| ''[[spo0A]]'' || '''[http://subtipathways.uni-goettingen.de ''Subti''Pathways]''' <br />
|-<br />
| ''[[glnA]]'' || '''[[Lists of genes, proteins and RNAs]]'''<br />
|-<br />
| ''[[rny]]'' || '''[[Categories]]'''<br />
|-<br />
| ''[[pckA]]'' || '''[[methods]]''' <br />
|-<br />
| ''[[dnaA]]'' || '''[[metabolism]]''' <br />
|-<br />
| ''[[rnpA]]'' || '''[[protein-protein interactions]]''' <br />
|-<br />
| ''[[sigB]]'' || '''[[genome-wide analyses]]'''<br />
|-<br />
| ''[[ptkA]]'' || '''[[list of plasmids]]'''<br />
|-<br />
| ''[[mreC]]'' || '''[[labs working on Bacillus|labs working on ''Bacillus'']]'''<br />
|-<br />
| ''[[ccpA]]'' || '''[[the people behind SubtiWiki|the people behind ''Subti''Wiki]]''' <br />
|-<br />
| ''[[sr1]]'' || '''[[templates]]''' <br />
|-<br />
| || '''[http://www.subtiwiki.uni-goettingen.de/otherFiles/classification.zip Classification of genes]''' <br />
|}<br />
<br><br />
<big>'''Publications describing ''Subti''Wiki and ''Subti''Pathways:'''</big><br />
<div style="width:73%"><pubmed> 20157485 19959575 </pubmed></div><br />
<br><br><br><br><br><br></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=139729
Main Page
2011-01-28T12:02:50Z
<p>Aschmei: </p>
<hr />
<div><big>Welcome to '''''Subti''Wiki'''! </big> - ''Bacillus subtilis'' annotation the "wiki" way!<br/><br />
[[File:Start_page_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/]]<br />
[[File:Playground_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Playground]]<br />
[[File:Wish_List_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Wish_List]]<br />
<br/><br />
<big>'''Contact:'''</big> [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br />
<br />
<br/><br />
<big>'''Upcoming events:'''</big> <br />
* '''March 14 - 16, 2011:''' The European [[BACELL meeting]] will take place in Göttingen, Germany. [mailto:jstuelk@gwdg.de contact], [[BACELL meeting|website]]<br />
* '''June 2011:''' The 16th International Conference on Bacilli (aka 6th International Conference on Gram-positive Microorganisms) will take place in lovely Tuscany, Italy. [http://www.grampositiveconference.org/index.html Conference website]<br />
<br/><br />
<big>'''News in ''Subti''Wiki:'''</big> <br />
* '''December 2010:''' the beta version of an interactive protein-protein interaction map is available [http://cellpublisher.gobics.de/subtinteract/interactionList/PtsH here] (just replace "PtsH" in the browser line by the protein of your interest)<br />
* '''December 2010:''' [http://cellpublisher.gobics.de/scp.html SubtiCellPublisher] allows the conversion of CellDesigner diagrams to navigatable presentations in the style of [[SubtiPathways]]<br />
* '''December 2010:''' all genes are linked to [[regulons]], and the pages of the [[regulons]] provide an overview on all genes that are members of this specific regulon.<br />
* '''December 2010:''' all genes/proteins are linked to [[categories]], and the pages of the [[categories]] provide an overview on all genes/proteins that are members of this specific category.<br />
* '''November 2010:''' a beta version of [http://subtiwiki.uni-goettingen.de/pathways/SubtInteract/demo_mitlinks/ SubtInteract] is online<br />
* '''August 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources], [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis], [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling], and [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] were uploaded to [[SubtiPathways]]<br />
* '''July 2010:''' A manually curated functional classification of ''Bacillus'' genes can be downloaded [http://www.subtiwiki.uni-goettingen.de/otherFiles/classification.zip here].<br />
* '''March 2010:''' novel [[plasmids]] for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, [[pGP1087]] and [[pGP1331]])<br />
* '''February 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_synthesis.html lipid biosynthesis], [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html fatty acid degradation], [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html control of biofilm formation] and [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html phosphorelay] were uploaded to [[SubtiPathways]]<br />
<br/><br />
{| border="0" cellpadding="1"<br />
|width="300"|<big>'''Genes''' (examples)</big><br />
|width="300"|<big>'''Additional pages'''</big><br />
|- style="height:20px" <br />
| ''[[spo0A]]'' || '''[http://subtipathways.uni-goettingen.de ''Subti''Pathways]''' <br />
|-<br />
| ''[[glnA]]'' || '''[[Lists of genes, proteins and RNAs]]'''<br />
|-<br />
| ''[[rny]]'' || '''[[Categories]]'''<br />
|-<br />
| ''[[pckA]]'' || '''[[methods]]''' <br />
|-<br />
| ''[[dnaA]]'' || '''[[metabolism]]''' <br />
|-<br />
| ''[[rnpA]]'' || '''[[protein-protein interactions]]''' <br />
|-<br />
| ''[[sigB]]'' || '''[[genome-wide analyses]]'''<br />
|-<br />
| ''[[ptkA]]'' || '''[[list of plasmids]]'''<br />
|-<br />
| ''[[mreC]]'' || '''[[labs working on Bacillus|labs working on ''Bacillus'']]'''<br />
|-<br />
| ''[[ccpA]]'' || '''[[the people behind SubtiWiki|the people behind ''Subti''Wiki]]''' <br />
|-<br />
| ''[[sr1]]'' || '''[[templates]]''' <br />
|-<br />
| || '''[http://www.subtiwiki.uni-goettingen.de/otherFiles/classification.zip Classification of genes]''' <br />
|}</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=139728
Main Page
2011-01-28T12:01:54Z
<p>Aschmei: </p>
<hr />
<div><big>Welcome to '''''Subti''Wiki'''! </big> - ''Bacillus subtilis'' annotation the "wiki" way!<br/><br />
[[File:Start_page_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/]]<br />
[[File:Playground_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Playground]]<br />
[[File:Wish_List_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Wish_List]]<br />
<br/><br />
<big>'''Contact:'''</big> [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]<br />
<br />
<br/><br />
<big>'''Upcoming events:'''</big> <br />
* '''March 14 - 16, 2011:''' The European [[BACELL meeting]] will take place in Göttingen, Germany. [mailto:jstuelk@gwdg.de contact], [[BACELL meeting|website]]<br />
* '''June 2011:''' The 16th International Conference on Bacilli (aka 6th International Conference on Gram-positive Microorganisms) will take place in lovely Tuscany, Italy. [http://www.grampositiveconference.org/index.html Conference website]<br />
<br/><br />
<big>'''News in ''Subti''Wiki:'''</big> <br />
* '''December 2010:''' the beta version of an interactive protein-protein interaction map is available [http://cellpublisher.gobics.de/subtinteract/interactionList/PtsH here] (just replace "PtsH" in the browser line by the protein of your interest)<br />
* '''December 2010:''' [http://cellpublisher.gobics.de/scp.html SubtiCellPublisher] allows the conversion of CellDesigner diagrams to navigatable presentations in the style of [[SubtiPathways]]<br />
* '''December 2010:''' all genes are linked to [[regulons]], and the pages of the [[regulons]] provide an overview on all genes that are members of this specific regulon.<br />
* '''December 2010:''' all genes/proteins are linked to [[categories]], and the pages of the [[categories]] provide an overview on all genes/proteins that are members of this specific category.<br />
* '''November 2010:''' a beta version of [http://subtiwiki.uni-goettingen.de/pathways/SubtInteract/demo_mitlinks/ SubtInteract] is online<br />
* '''August 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources], [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis], [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling], and [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] were uploaded to [[SubtiPathways]]<br />
* '''July 2010:''' A manually curated functional classification of ''Bacillus'' genes can be downloaded [http://www.subtiwiki.uni-goettingen.de/otherFiles/classification.zip here].<br />
* '''March 2010:''' novel [[plasmids]] for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, [[pGP1087]] and [[pGP1331]])<br />
* '''February 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_synthesis.html lipid biosynthesis], [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html fatty acid degradation], [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html control of biofilm formation] and [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html phosphorelay] were uploaded to [[SubtiPathways]]<br />
<br/></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=139727
Main Page
2011-01-28T12:01:26Z
<p>Aschmei: </p>
<hr />
<div><big>Welcome to '''''Subti''Wiki'''! </big> - ''Bacillus subtilis'' annotation the "wiki" way!<br/><br />
[[File:Start_page_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/]]<br />
[[File:Playground_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Playground]]<br />
[[File:Wish_List_small.png|right|link=http://www.subtiwiki.uni-goettingen.de/wiki/index.php/Wish_List]]<br />
<br/><br />
<big>'''Contact:'''</big> [http://wwwuser.gwdg.de/~genmibio/stuelke.html General Microbiology, University of Göttingen], [mailto:jstuelk@gwdg.de send mail]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=139726
Main Page
2011-01-28T12:00:34Z
<p>Aschmei: </p>
<hr />
<div>* '''August 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/other_nitrogen_sources/index.html Utilization of other nitrogen sources], [http://subtiwiki.uni-goettingen.de/pathways/biotin/index.html Biotin synthesis], [http://subtiwiki.uni-goettingen.de/pathways/murein/index.html Murein recycling], and [http://subtiwiki.uni-goettingen.de/pathways/secretion/index.html Protein secretion] were uploaded to [[SubtiPathways]]<br />
* '''July 2010:''' A manually curated functional classification of ''Bacillus'' genes can be downloaded [http://www.subtiwiki.uni-goettingen.de/otherFiles/classification.zip here].<br />
* '''March 2010:''' novel [[plasmids]] for the creation of strains expressing proteins with a C-terminal triple FLAG-tag (for simple immunological analysis of the proteins, [[pGP1087]] and [[pGP1331]])<br />
* '''February 2010:''' several new pathway maps including [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_synthesis.html lipid biosynthesis], [http://subtiwiki.uni-goettingen.de/pathways/fatty_acid_degradation.html fatty acid degradation], [http://subtiwiki.uni-goettingen.de/pathways/biofilm.html control of biofilm formation] and [http://subtiwiki.uni-goettingen.de/pathways/phosphorelay.html phosphorelay] were uploaded to [[SubtiPathways]]<br />
<br/></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=139725
Main Page
2011-01-28T12:00:21Z
<p>Aschmei: Blanked the page</p>
<hr />
<div></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=139724
Main Page
2011-01-28T11:58:34Z
<p>Aschmei: Undo revision 139722 by Aschmei (talk)</p>
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==<center>[http://starsearchtool.com/SESS_xn1MjE3fHwxMjk2MTY2MjIxfHwxOTUyfHwoRU5HSU5FKSBNZWRpYVdpa2k%3D_.html <big>'''<u>>>> <<<</u>'''</big>]</center>==<br />
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==== ====<br />
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all jobs announcement in cambodia<br />
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booz allen hamilton jobs<br />
city of champlin jobs<br />
delivery jobs manchester<br />
call center jobs in wales<br />
cisco+jobs<br />
banking jobs parramatta</small><br />
.<br />
.<br />
.<br />
<small>computers jobs in pakistan<br />
built environment jobs<br />
child book illustration jobs<br />
derby evening telegraph jobs<br />
creating new jobs in kansas<br />
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crna jobs colorado<br />
chemical plant manager jobs alabama<br />
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city of vaughan jobs</small><br />
.<br />
.<br />
.<br />
<small>crane jobs<br />
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aylesbury council jobs<br />
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colorado springs jobs work from home loan officer<br />
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.</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Main_Page&diff=139722
Main Page
2011-01-28T11:51:43Z
<p>Aschmei: /* >>> */</p>
<hr />
<div>.<br />
<br />
.<br />
<br />
.<br />
<br />
.<br />
<br />
.<br />
<br />
.<br />
<br />
.<br />
<br />
Main page temporarily not available</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Lgt&diff=139695
Lgt
2011-01-25T13:13:13Z
<p>Aschmei: /* Database entries */</p>
<hr />
<div>* '''Description:''' prolipoprotein diacylglyceryl transferase <br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''lgt''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''gerF, yvoC ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || prolipoprotein diacylglyceryl transferase<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || lipomodification of lipoproteins<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism], [http://subtiwiki.uni-goettingen.de/wiki/index.php/Protein_secretion Protein secretion]'''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 30 kDa, 8.96 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 807 bp, 269 aa <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yvoD]]'', ''[[hprK]]''<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB15504&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''<br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:lgt_context.gif]]<br />
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div><br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br />
<br/><br/><br/><br/><br/><br/><br />
<br />
= [[Categories]] containing this gene/protein =<br />
{{SubtiWiki category|[[protein modification]]}},<br />
{{SubtiWiki category|[[membrane proteins]]}}<br />
<br />
= This gene is a member of the following [[regulons]] =<br />
<br />
<br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:''' BSU34990<br />
<br />
===Phenotypes of a mutant ===<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' no entry<br />
<br />
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG12611]<br />
<br />
=== Additional information===<br />
<br />
<br />
<br />
<br />
=The protein=<br />
<br />
=== Basic information/ Evolution ===<br />
<br />
* '''Catalyzed reaction/ biological activity:''' <br />
<br />
* '''Protein family:''' lgt family (according to Swiss-Prot)<br />
<br />
* '''Paralogous protein(s):'''<br />
<br />
=== Extended information on the protein ===<br />
<br />
* '''Kinetic information:''' <br />
<br />
* '''Domains:''' <br />
<br />
* '''Modification:'''<br />
<br />
* '''Cofactor(s):'''<br />
<br />
* '''Effectors of protein activity:'''<br />
<br />
* '''Interactions:'''<br />
<br />
* '''Localization:''' membrane associated [http://www.ncbi.nlm.nih.gov/pubmed/18763711 PubMed] <br />
<br />
=== Database entries ===<br />
<br />
* '''Structure:''' <br />
<br />
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34752 O34752]<br />
<br />
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU34990]<br />
<br />
* '''E.C. number:''' [http://www.expasy.org/enzyme/2.4.99.- 2.4.99.-]<br />
<br />
=== Additional information===<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' ''[[hprK]]-[[lgt]]-[[yvoD]]-[[yvoE]]-[[yvoF]]'' {{PubMed|9465101}}<br />
<br />
* '''[[Sigma factor]]:''' <br />
<br />
* '''Regulation:''' <br />
<br />
* '''Regulatory mechanism:''' <br />
<br />
* '''Additional information:''' <br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:''' GP851 (deletion of ''[[lgt]]-[[yvoD]]-[[yvoE]]-[[yvoF]]'', replaced by aphA3), available in the [[Stülke]] lab<br />
<br />
* '''Expression vector:'''<br />
<br />
* '''lacZ fusion:'''<br />
<br />
* '''GFP fusion:'''<br />
<br />
* '''two-hybrid system:''' <br />
<br />
* '''Antibody:'''<br />
<br />
=Labs working on this gene/protein=<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
<br />
<pubmed>9882689,10096076,15126458,18763711, 9465101</pubmed><br />
<br />
[[Category:Protein-coding genes]]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=PrkC&diff=123185
PrkC
2010-08-04T08:28:13Z
<p>Aschmei: /* Database entries */</p>
<hr />
<div>* '''Description:''' [[protein kinases and phosphatases|protein kinase]] C <br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''prkC''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yloP ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || [[protein kinases and phosphatases|protein kinase]]<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || germination in response to muropeptides<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 71 kDa, 4.833 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1944 bp, 648 aa <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[prpC]]'', ''[[cpgA]]''<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13450&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''<br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:prkC_context.gif]]<br />
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div><br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br />
<br/><br/><br/><br/><br/><br/><br />
<br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:''' BSU15770<br />
<br />
===Phenotypes of a mutant ===<br />
* unable to germinate in response to muropeptides {{PubMed|18984160}}<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' no entry<br />
<br />
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13391]<br />
<br />
=== Additional information===<br />
<br />
<br />
=The protein=<br />
<br />
=== Basic information/ Evolution ===<br />
<br />
* '''Catalyzed reaction/ biological activity:''' ATP + a protein = ADP + a phosphoprotein (according to Swiss-Prot) <br />
<br />
* '''Protein family:''' [[protein kinases and phosphatases|protein kinase]] domain (according to Swiss-Prot)<br />
<br />
* '''Paralogous protein(s):'''<br />
<br />
=== Proteins phosphorylated by PrkC ===<br />
<br />
[[CpgA]], [[tufA | EF-Tu]], [[YezB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19246764 PubMed], [[fusA | EF-G]] [http://www.ncbi.nlm.nih.gov/sites/entrez/18984160 PubMed], [[YwjH]], [[GlnA]], [[Icd]], [[AlsD]], [[ptsH|HPr]] {{PubMed|20389117}}<br />
<br />
=== Extended information on the protein ===<br />
<br />
* '''Kinetic information:''' <br />
<br />
* '''Domains:''' PASTA domain at the C-terminus (binds muropeptides) {{PubMed|18984160}} <br />
<br />
* '''Modification:''' phosphorylation on Thr-290 [http://www.ncbi.nlm.nih.gov/sites/entrez/17218307 PubMed], autophosphorylation on multiple threonine residues {{PubMed|12842463,20389117}}<br />
<br />
* '''Cofactor(s):'''<br />
<br />
* '''Effectors of protein activity:''' activated by muropeptides {{PubMed|18984160}} <br />
<br />
* '''Interactions:'''<br />
<br />
* '''Localization:''' inner spore membrane {{PubMed|18984160}}, membrane [http://www.ncbi.nlm.nih.gov/sites/entrez/12406230 PubMed]<br />
<br />
=== Database entries ===<br />
<br />
* '''Structure:''' <br />
<br />
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34507 O34507]<br />
<br />
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU15770]<br />
<br />
* '''E.C. number:'''[http://www.expasy.org/enzyme/2.7.11.1 2.7.11.1]<br />
<br />
=== Additional information===<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' ''[[prpC]]-[[prkC]]-[[cpgA]]'' [http://www.ncbi.nlm.nih.gov/pubmed/16025310?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PubMed]<br />
<br />
* '''Sigma factor:''' <br />
<br />
* '''Regulation:''' <br />
<br />
* '''Regulatory mechanism:''' <br />
<br />
* '''Additional information:'''<br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:''' GP576 (spc), OMG302 (aphA3), available in [[Stülke]] lab<br />
<br />
* '''Expression vector:''' <br />
** for expression/ purification from ''B. subtilis'' with N-terminal Strep-tag, for [[SPINE]], in [[pGP380]]: pGP832, available in [[Stülke]] lab<br />
** for expression/ purification of the kinase domain from ''B. subtilis'' with N-terminal Strep-tag, for [[SPINE]], in [[pGP380]]: pGP849, available in [[Stülke]] lab<br />
** for expression, purification in ''E. coli'' with N-terminal His-tag, in [[pWH844]]: pGP1001, available in [[Stülke]] lab<br />
** for expression, purification in ''E. coli'' with N-terminal Strep-tag, in [[pGP172]]: pGP825, available in [[Stülke]] lab<br />
<br />
* '''lacZ fusion:''' pGP829 (in [[pAC7]]), available in [[Stülke]] lab<br />
<br />
* '''GFP fusion:'''<br />
<br />
* '''two-hybrid system:''' <br />
<br />
* '''Antibody:'''<br />
<br />
=Labs working on this gene/protein=<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
==Phosphorylation of PrkC==<br />
<pubmed>12842463 , 20563625 </pubmed><br />
==Targets of PrkC-dependent phosphorylation==<br />
<pubmed>19246764, 20070526 ,20389117 </pubmed><br />
==Phsiological role of PrkC==<br />
<pubmed>12399479, 12406230, 19246764, 12842463 , 18984160 </pubmed><br />
==Expression of PrkC==<br />
<pubmed>, 16025310, </pubmed><br />
[[Category:Protein-coding genes]]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=PrkC&diff=123184
PrkC
2010-08-04T08:27:27Z
<p>Aschmei: /* Database entries */</p>
<hr />
<div>* '''Description:''' [[protein kinases and phosphatases|protein kinase]] C <br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''prkC''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yloP ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || [[protein kinases and phosphatases|protein kinase]]<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || germination in response to muropeptides<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/carbon_flow.html Central C-metabolism]'''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 71 kDa, 4.833 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 1944 bp, 648 aa <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[prpC]]'', ''[[cpgA]]''<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB13450&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''<br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:prkC_context.gif]]<br />
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div><br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br />
<br/><br/><br/><br/><br/><br/><br />
<br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:''' BSU15770<br />
<br />
===Phenotypes of a mutant ===<br />
* unable to germinate in response to muropeptides {{PubMed|18984160}}<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' no entry<br />
<br />
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG13391]<br />
<br />
=== Additional information===<br />
<br />
<br />
=The protein=<br />
<br />
=== Basic information/ Evolution ===<br />
<br />
* '''Catalyzed reaction/ biological activity:''' ATP + a protein = ADP + a phosphoprotein (according to Swiss-Prot) <br />
<br />
* '''Protein family:''' [[protein kinases and phosphatases|protein kinase]] domain (according to Swiss-Prot)<br />
<br />
* '''Paralogous protein(s):'''<br />
<br />
=== Proteins phosphorylated by PrkC ===<br />
<br />
[[CpgA]], [[tufA | EF-Tu]], [[YezB]] [http://www.ncbi.nlm.nih.gov/sites/entrez/19246764 PubMed], [[fusA | EF-G]] [http://www.ncbi.nlm.nih.gov/sites/entrez/18984160 PubMed], [[YwjH]], [[GlnA]], [[Icd]], [[AlsD]], [[ptsH|HPr]] {{PubMed|20389117}}<br />
<br />
=== Extended information on the protein ===<br />
<br />
* '''Kinetic information:''' <br />
<br />
* '''Domains:''' PASTA domain at the C-terminus (binds muropeptides) {{PubMed|18984160}} <br />
<br />
* '''Modification:''' phosphorylation on Thr-290 [http://www.ncbi.nlm.nih.gov/sites/entrez/17218307 PubMed], autophosphorylation on multiple threonine residues {{PubMed|12842463,20389117}}<br />
<br />
* '''Cofactor(s):'''<br />
<br />
* '''Effectors of protein activity:''' activated by muropeptides {{PubMed|18984160}} <br />
<br />
* '''Interactions:'''<br />
<br />
* '''Localization:''' inner spore membrane {{PubMed|18984160}}, membrane [http://www.ncbi.nlm.nih.gov/sites/entrez/12406230 PubMed]<br />
<br />
=== Database entries ===<br />
<br />
* '''Structure:''' <br />
<br />
* '''UniProt:''' [http://www.uniprot.org/uniprot/O34507 O34507]<br />
<br />
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU15770]<br />
<br />
* '''E.C. number:'''[http://www.expasy.org/enzyme/2.7.11.1 2.7.11.1]<br />
<br />
=== Additional information===<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' ''[[prpC]]-[[prkC]]-[[cpgA]]'' [http://www.ncbi.nlm.nih.gov/pubmed/16025310?ordinalpos=9&itool=EntrezSystem2.PEntrez.Pubmed.Pubmed_ResultsPanel.Pubmed_DefaultReportPanel.Pubmed_RVDocSum PubMed]<br />
<br />
* '''Sigma factor:''' <br />
<br />
* '''Regulation:''' <br />
<br />
* '''Regulatory mechanism:''' <br />
<br />
* '''Additional information:'''<br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:''' GP576 (spc), OMG302 (aphA3), available in [[Stülke]] lab<br />
<br />
* '''Expression vector:''' <br />
** for expression/ purification from ''B. subtilis'' with N-terminal Strep-tag, for [[SPINE]], in [[pGP380]]: pGP832, available in [[Stülke]] lab<br />
** for expression/ purification of the kinase domain from ''B. subtilis'' with N-terminal Strep-tag, for [[SPINE]], in [[pGP380]]: pGP849, available in [[Stülke]] lab<br />
** for expression, purification in ''E. coli'' with N-terminal His-tag, in [[pWH844]]: pGP1001, available in [[Stülke]] lab<br />
** for expression, purification in ''E. coli'' with N-terminal Strep-tag, in [[pGP172]]: pGP825, available in [[Stülke]] lab<br />
<br />
* '''lacZ fusion:''' pGP829 (in [[pAC7]]), available in [[Stülke]] lab<br />
<br />
* '''GFP fusion:'''<br />
<br />
* '''two-hybrid system:''' <br />
<br />
* '''Antibody:'''<br />
<br />
=Labs working on this gene/protein=<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
==Phosphorylation of PrkC==<br />
<pubmed>12842463 , 20563625 </pubmed><br />
==Targets of PrkC-dependent phosphorylation==<br />
<pubmed>19246764, 20070526 ,20389117 </pubmed><br />
==Phsiological role of PrkC==<br />
<pubmed>12399479, 12406230, 19246764, 12842463 , 18984160 </pubmed><br />
==Expression of PrkC==<br />
<pubmed>, 16025310, </pubmed><br />
[[Category:Protein-coding genes]]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=User_talk:Send&diff=122380
User talk:Send
2010-06-09T07:38:00Z
<p>Aschmei: Blanked the page</p>
<hr />
<div></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121295
Talk:SubtiPathways
2010-03-08T15:02:30Z
<p>Aschmei: /* Fatty acid degradation */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
* write comments here<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* write comments here<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
* write comments here<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
* write comments here <br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* write comments here<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
* write comments here<br />
<br />
=== Biofilm formation ===<br />
<br />
* write comments here</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121293
Talk:SubtiPathways
2010-03-08T15:00:01Z
<p>Aschmei: /* Biofilm formation */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
* write comments here<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* write comments here<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
* write comments here <br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* write comments here<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
* write comments here<br />
<br />
=== Biofilm formation ===<br />
<br />
* write comments here</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121292
Talk:SubtiPathways
2010-03-08T14:59:11Z
<p>Aschmei: /* Phenylalanine, tyrosine, tryptophan */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
* write comments here<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* write comments here<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
* write comments here <br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* write comments here<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
* write comments here<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121290
Talk:SubtiPathways
2010-03-08T14:45:15Z
<p>Aschmei: /* General comments about all diagrams */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
* write comments here<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
* write comments here <br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* write comments here<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
* write comments here<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121289
Talk:SubtiPathways
2010-03-08T14:44:42Z
<p>Aschmei: /* Stress response */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
* write comments here<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
* write comments here <br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* write comments here<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
* write comments here<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121288
Talk:SubtiPathways
2010-03-08T14:42:15Z
<p>Aschmei: /* Central carbon metabolism */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
* write comments here<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
* write comments here <br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
* write comments here<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121287
Talk:SubtiPathways
2010-03-08T14:41:49Z
<p>Aschmei: /* tRNA charging */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
* write comments here <br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
* write comments here<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121286
Talk:SubtiPathways
2010-03-08T14:40:44Z
<p>Aschmei: /* Thiamin synthesis */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
* write comments here <br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121285
Talk:SubtiPathways
2010-03-08T14:40:29Z
<p>Aschmei: /* Riboflavin and FAD synthesis */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
* write comments here<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121284
Talk:SubtiPathways
2010-03-08T14:40:10Z
<p>Aschmei: /* Purine salvage pathways */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
* write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121283
Talk:SubtiPathways
2010-03-08T14:40:01Z
<p>Aschmei: /* Purine salvage pathways */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*´write comments here<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121282
Talk:SubtiPathways
2010-03-08T14:38:43Z
<p>Aschmei: /* Gene regulation of nucleotides */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
* write comments here<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121281
Talk:SubtiPathways
2010-03-08T14:26:08Z
<p>Aschmei: /* Phenylalanine, tyrosine, tryptophan */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121280
Talk:SubtiPathways
2010-03-08T14:25:57Z
<p>Aschmei: /* Phenylalanine, tyrosine, tryptophan */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (Reaktionen Chorismat ---> Folat --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121279
Talk:SubtiPathways
2010-03-08T14:23:41Z
<p>Aschmei: /* Lysine, threonine */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* write comments here<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121278
Talk:SubtiPathways
2010-03-08T14:22:34Z
<p>Aschmei: /* Isoleucine, valine, leucine */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121277
Talk:SubtiPathways
2010-03-08T14:19:05Z
<p>Aschmei: /* Aspartate, asparagine */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121276
Talk:SubtiPathways
2010-03-08T14:18:32Z
<p>Aschmei: /* Alanine, glycine, serine */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* (warum ist YveA hier nicht drin?)<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121275
Talk:SubtiPathways
2010-03-08T14:17:31Z
<p>Aschmei: /* Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
* der Glycin-Abbau über gcvT, gcvPA, gcvPB und gcvH fehlt (Jörg)<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* (warum ist YveA hier nicht drin?)<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=121274
Talk:SubtiPathways
2010-03-08T14:16:46Z
<p>Aschmei: /* Utilization of different carbon sources */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
* write comments here <br />
<br />
<br/><br />
<br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
* (die Anordnung der einzelnen Teile in diesem Diagramm ist suboptimal, sie sollten noch mal verschoben werden (Jörg))<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
* der Glycin-Abbau über gcvT, gcvPA, gcvPB und gcvH fehlt (Jörg)<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* (warum ist YveA hier nicht drin?)<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
* Cystin-Aufnahme-Systeme mit aufnehmen: TcyP, TcyABC, TcyJKLMN (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*write comments here<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
* Isoleucin-Abbau: Bcd und YwaA sind zwei unterschiedliche Reaktionen, Bcd geht mit NAD, nicht mit 2-KG (Jörg)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Lipid metabolism ==<br />
<br />
=== Fatty acid and phospholipid biosynthesis ===<br />
<br />
* The structure of PDGP is wrong (although the name, CDP-diacylglycerol, seems right). Wrong PubChem ID?<br />
* The same applies for phosphatidylglycerol, L-serine, and others.<br />
<br />
=== Fatty acid degradation ===<br />
<br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
<br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
=== Riboflavin and FAD synthesis ===<br />
<br />
=== Thiamin synthesis ===<br />
<br />
<br/><br />
<br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Phosphorelay ===<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg<br />
<br />
=== Biofilm formation ===</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=AsnH&diff=121183
AsnH
2010-03-01T13:38:15Z
<p>Aschmei: /* Expression and regulation */</p>
<hr />
<div>* '''Description:''' asparagine synthase (glutamine-hydrolysing) <br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''asnH''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yxaN ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || asparagine synthase (glutamine-hydrolysing))<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of asparagine<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/aspartate_asparagine.html Asp, Asn]'''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 85 kDa, 5.528 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2241 bp, 747 aa <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxnB]]'', ''[[yxaM]]''<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16028&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''<br />
|-<br />
|-<br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:asnH_context.gif]]<br />
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div><br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br />
<br/><br/><br/><br/><br/><br/><br />
<br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:''' BSU39920<br />
<br />
===Phenotypes of a mutant ===<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxbBA-yxnB-asnH-yxaM.html]<br />
<br />
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11116]<br />
<br />
=== Additional information===<br />
<br />
<br />
=The protein=<br />
<br />
=== Basic information/ Evolution ===<br />
<br />
* '''Catalyzed reaction/ biological activity:''' ATP + L-aspartate + L-glutamine + H<sub>2</sub>O = AMP + diphosphate + L-asparagine + L-glutamate (according to Swiss-Prot) <br />
<br />
* '''Protein family:''' asparagine synthetase family (according to Swiss-Prot)<br />
<br />
* '''Paralogous protein(s):'''<br />
<br />
=== Extended information on the protein ===<br />
<br />
* '''Kinetic information:''' <br />
<br />
* '''Domains:''' <br />
<br />
* '''Modification:'''<br />
<br />
* '''Cofactor(s):'''<br />
<br />
* '''Effectors of protein activity:'''<br />
<br />
* '''Interactions:'''<br />
<br />
* '''Localization:'''<br />
<br />
=== Database entries ===<br />
<br />
* '''Structure:''' <br />
<br />
* '''UniProt:''' [http://www.uniprot.org/uniprot/P42113 P42113]<br />
<br />
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU39920]<br />
<br />
* '''E.C. number:''' [http://www.expasy.org/enzyme/6.3.5.4 6.3.5.4]<br />
<br />
=== Additional information===<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' ''[[yxbB]]-[[yxbA]]-[[yxnB]]-[[asnH]]-[[yxaM]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/10746760 PubMed]<br />
<br />
* '''[[Sigma factor]]:''' [[sigA]] [http://www.ncbi.nlm.nih.gov/sites/entrez/20185509 PubMed]<br />
<br />
* '''Regulation:''' <br />
** repressed during growth in the presence of branched chain amino acids ([[CodY]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]<br />
** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/15101989 PubMed]<br />
<br />
* '''Regulatory mechanism:''' <br />
** [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]<br />
** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15101989 PubMed]<br />
<br />
* '''Additional information:'''<br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:'''<br />
<br />
* '''Expression vector:'''<br />
<br />
* '''lacZ fusion:'''<br />
<br />
* '''GFP fusion:'''<br />
<br />
* '''two-hybrid system:''' <br />
<br />
* '''Antibody:'''<br />
<br />
=Labs working on this gene/protein=<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
<br />
<pubmed>20185509, 10746760,12618455,10498721,,12618455,15101989, </pubmed><br />
<br />
[[Category:Protein-coding genes]]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=AsnH&diff=121182
AsnH
2010-03-01T13:36:59Z
<p>Aschmei: /* References */</p>
<hr />
<div>* '''Description:''' asparagine synthase (glutamine-hydrolysing) <br/><br/><br />
<br />
{| align="right" border="1" cellpadding="2" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Gene name'''<br />
|''asnH''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Synonyms''' || ''yxaN ''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Essential''' || no <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Product''' || asparagine synthase (glutamine-hydrolysing))<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Function''' || biosynthesis of asparagine<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"| '''Metabolic function and regulation of this protein in [[SubtiPathways|''Subti''Pathways]]: <br/>[http://subtiwiki.uni-goettingen.de/pathways/aspartate_asparagine.html Asp, Asn]'''<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''MW, pI''' || 85 kDa, 5.528 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''Gene length, protein length''' || 2241 bp, 747 aa <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''Immediate neighbours''' || ''[[yxnB]]'', ''[[yxaM]]''<br />
|-<br />
|colspan="2" style="background:#FAF8CC;" align="center"|'''Get the DNA and protein [http://srs.ebi.ac.uk/srsbin/cgi-bin/wgetz?-e+&#91;EMBLCDS:CAB16028&#93;+-newId sequences] <br/> (Barbe ''et al.'', 2009)'''<br />
|-<br />
|-<br />
|-<br />
|colspan="2" | '''Genetic context''' <br/> [[Image:asnH_context.gif]]<br />
<div align="right"> <small>This image was kindly provided by [http://genolist.pasteur.fr/SubtiList/ SubtiList]</small></div><br />
|-<br />
|}<br />
<br />
__TOC__<br />
<br />
<br/><br/><br/><br/><br/><br/><br />
<br />
=The gene=<br />
<br />
=== Basic information ===<br />
<br />
* '''Locus tag:''' BSU39920<br />
<br />
===Phenotypes of a mutant ===<br />
<br />
=== Database entries ===<br />
<br />
* '''DBTBS entry:''' [http://dbtbs.hgc.jp/COG/prom/yxbBA-yxnB-asnH-yxaM.html]<br />
<br />
* '''SubtiList entry:''' [http://genolist.pasteur.fr/SubtiList/genome.cgi?gene_detail+BG11116]<br />
<br />
=== Additional information===<br />
<br />
<br />
=The protein=<br />
<br />
=== Basic information/ Evolution ===<br />
<br />
* '''Catalyzed reaction/ biological activity:''' ATP + L-aspartate + L-glutamine + H<sub>2</sub>O = AMP + diphosphate + L-asparagine + L-glutamate (according to Swiss-Prot) <br />
<br />
* '''Protein family:''' asparagine synthetase family (according to Swiss-Prot)<br />
<br />
* '''Paralogous protein(s):'''<br />
<br />
=== Extended information on the protein ===<br />
<br />
* '''Kinetic information:''' <br />
<br />
* '''Domains:''' <br />
<br />
* '''Modification:'''<br />
<br />
* '''Cofactor(s):'''<br />
<br />
* '''Effectors of protein activity:'''<br />
<br />
* '''Interactions:'''<br />
<br />
* '''Localization:'''<br />
<br />
=== Database entries ===<br />
<br />
* '''Structure:''' <br />
<br />
* '''UniProt:''' [http://www.uniprot.org/uniprot/P42113 P42113]<br />
<br />
* '''KEGG entry:''' [http://www.genome.jp/dbget-bin/www_bget?bsu:BSU39920]<br />
<br />
* '''E.C. number:''' [http://www.expasy.org/enzyme/6.3.5.4 6.3.5.4]<br />
<br />
=== Additional information===<br />
<br />
=Expression and regulation=<br />
<br />
* '''Operon:''' ''[[yxbB]]-[[yxbA]]-[[yxnB]]-[[asnH]]-[[yxaM]]'' [http://www.ncbi.nlm.nih.gov/sites/entrez/10746760 PubMed]<br />
<br />
* '''[[Sigma factor]]:''' <br />
<br />
* '''Regulation:''' <br />
** repressed during growth in the presence of branched chain amino acids ([[CodY]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]<br />
** repressed during logrithmic growth ([[AbrB]]) [http://www.ncbi.nlm.nih.gov/sites/entrez/15101989 PubMed]<br />
<br />
* '''Regulatory mechanism:''' <br />
** [[CodY]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/12618455 PubMed]<br />
** [[AbrB]]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15101989 PubMed]<br />
<br />
* '''Additional information:'''<br />
<br />
=Biological materials =<br />
<br />
* '''Mutant:'''<br />
<br />
* '''Expression vector:'''<br />
<br />
* '''lacZ fusion:'''<br />
<br />
* '''GFP fusion:'''<br />
<br />
* '''two-hybrid system:''' <br />
<br />
* '''Antibody:'''<br />
<br />
=Labs working on this gene/protein=<br />
<br />
=Your additional remarks=<br />
<br />
=References=<br />
<br />
<pubmed>20185509, 10746760,12618455,10498721,,12618455,15101989, </pubmed><br />
<br />
[[Category:Protein-coding genes]]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=User:Lflorez&diff=119555
User:Lflorez
2010-01-25T13:04:34Z
<p>Aschmei: </p>
<hr />
<div>{| align="left" border="5" cellpadding="5" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''user name'''<br />
|[http://wwwuser.gwdg.de/~genmibio/members/lflorez.htm Lope Andres Florez Weidinger] ([mailto:lflorez@gwdg.de send mail])<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''status''' || Ph.D.-student, <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''nick-name''' || Don Lope, El Patron, Lope Escobar<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''hair color''' || Coca-cola brown<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''weight''' || <small>2.500.000Euro/</small> 50kg<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''shoe size''' || 42 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''hobbies''' || import/export<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''dedication''' || IT-specialist<br />
|-<br />
|style="background:#FAF8CC;" align="center"|'''collaborating with ''' <br />
|style="background:#FAF8CC;" align="center"|'''[[User:Aschmei|Aschmei]] and [[User:CLammers|CLammers]] and [[User:Sroppel|Sroppel]]'''<br />
|-<br />
|-<br />
|}<br />
<br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br />
[[File:Lope.jpg]]<br />
<br />
<br/><br/></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=User:Aschmei&diff=118173
User:Aschmei
2009-12-18T10:17:34Z
<p>Aschmei: </p>
<hr />
<div>{| align="left" border="5" cellpadding="5" <br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''user name'''<br />
|Arne G. Schmeisky ([mailto:aschmei@gwdg.de send mail])<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''status''' || Ph.D. student <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''nickname''' || not invented by [[User:Heilers|Spicy-Eilers]] yet <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''hair color''' || white with brown spots<br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''weight''' || 75 kg<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''shoe size''' || 42 <br />
|-<br />
|style="background:#ABCDEF;" align="center"| '''hobbies''' || unknown<br />
|-<br />
|style="background:#ABCDEF;" align="center"|'''dedication''' || pathway-coordination, pathogen-host interaction<br />
|-<br />
|style="background:#FAF8CC;" align="center"|'''collaborating with ''' <br />
|style="background:#FAF8CC;" align="center"|'''[[CLammers]] and [[Sroppel]] '''<br />
|-<br />
|-<br />
|}<br />
<br/><br/><br/><br/><br/><br />
<br />
<br />
[[Image:DSC02558.JPG|400px|thumb|left|]]<br/><br/><br/><br/><br/><br/><br/><br />
<br />
<br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/><br/></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=FMN-box&diff=116989
FMN-box
2009-11-20T10:09:29Z
<p>Aschmei: </p>
<hr />
<div>[[Riboswitch]] that controls expression of the ''[[ypuE]]-[[ribD]]-[[ribE]]-[[ribA]]-[[ribH]]-[[ribT]]'' operon and of the ''[[ribU]]'' gene in response to FMN.<br />
<br />
<br />
<pubmed>12456892, 15808508<br />
</pubmed></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=FMN-box&diff=116988
FMN-box
2009-11-20T10:08:45Z
<p>Aschmei: </p>
<hr />
<div>[[Riboswitch]] that controls expression of the ''[[ypuE]]-[[ribD]]-[[ribE]]-[[ribA]]-[[ribH]]-[[ribT]]'' operon and of the ''[[ribU]]'' gene in response to FMN.<br />
<br />
<br />
<pubmed>12456892<br />
</pubmed></div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=User:Mberkmen&diff=115265
User:Mberkmen
2009-09-11T09:26:18Z
<p>Aschmei: Redirected page to Melanie Barker Berkmen</p>
<hr />
<div>#redirect [[Melanie Barker Berkmen]]</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=114402
Talk:SubtiPathways
2009-08-03T09:12:35Z
<p>Aschmei: /* Stress response */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. For example, yqjH is polY1. If you are on the PolY1 page in subtiwiki and you get the link to the pathway it is not obvious whtat to look for (PolY1) is not in the list. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
*(sugar between gluconate and xylose = '''beta'''-xylosides)<br />
<br />
<br />
<br/><br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
* (die Anordnung der einzelnen Teile in diesem Diagramm ist suboptimal, sie sollten noch mal verschoben werden (Jörg))<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
* der Glycin-Abbau über gcvT, gcvPA, gcvPB und gcvH fehlt (Jörg)<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* (warum ist YveA hier nicht drin?)<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*Repel: Description for HutU<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* (OpuAABCD muss OpuB(ABCD) sein)<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=114401
Talk:SubtiPathways
2009-08-03T09:09:41Z
<p>Aschmei: /* Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. For example, yqjH is polY1. If you are on the PolY1 page in subtiwiki and you get the link to the pathway it is not obvious whtat to look for (PolY1) is not in the list. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
*(sugar between gluconate and xylose = '''beta'''-xylosides)<br />
<br />
<br />
<br/><br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
* (die Anordnung der einzelnen Teile in diesem Diagramm ist suboptimal, sie sollten noch mal verschoben werden (Jörg))<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
* der Glycin-Abbau über gcvT, gcvPA, gcvPB und gcvH fehlt (Jörg)<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* (warum ist YveA hier nicht drin?)<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Repel: Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki. Sollte man aber erst mal mit Lope und Arne diskutieren (Jörg)<br />
<br />
=== Histidine ===<br />
<br />
*Repel: Description for HutU<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
* OpuAABCD muss OpuB(ABCD) sein<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=113782
Talk:SubtiPathways
2009-07-30T13:36:50Z
<p>Aschmei: /* Stress response */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. For example, yqjH is polY1. If you are on the PolY1 page in subtiwiki and you get the link to the pathway it is not obvious whtat to look for (PolY1) is not in the list. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
*(sugar between gluconate and xylose = '''beta'''-xylosides)<br />
<br />
<br />
<br/><br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
* die Anordnung der einzelnen Teile in diesem Diagramm ist suboptimal, sie sollten noch mal verschoben werden (Jörg)<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
* der Glycin-Abbau über gcvT, gcvPA, gcvPB und gcvH fehlt (Jörg)<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* (warum ist YveA hier nicht drin?)<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki.<br />
<br />
=== Histidine ===<br />
<br />
*Description for HutU<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
* Lysin-Abbau fehlt (Jörg)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* (sigF groß)<br />
* (glutamate (bei Prolinsynthese) lila)<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=113781
Talk:SubtiPathways
2009-07-30T13:32:56Z
<p>Aschmei: /* Purine salvage pathways */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. For example, yqjH is polY1. If you are on the PolY1 page in subtiwiki and you get the link to the pathway it is not obvious whtat to look for (PolY1) is not in the list. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
*(sugar between gluconate and xylose = '''beta'''-xylosides)<br />
<br />
<br />
<br/><br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
* die Anordnung der einzelnen Teile in diesem Diagramm ist suboptimal, sie sollten noch mal verschoben werden (Jörg)<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
* der Glycin-Abbau über gcvT, gcvPA, gcvPB und gcvH fehlt (Jörg)<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* (warum ist YveA hier nicht drin?)<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki.<br />
<br />
=== Histidine ===<br />
<br />
*Description for HutU<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
* Lysin-Abbau fehlt (Jörg)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* (GucA nicht in SubtiWiki)<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* sigF groß<br />
* glutamate (bei Prolinsynthese) lila<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg</div>
Aschmei
http://subtiwiki.uni-goettingen.de/wiki//index.php?title=Talk:SubtiPathways&diff=113780
Talk:SubtiPathways
2009-07-30T13:29:32Z
<p>Aschmei: /* Gene regulation of nucleotides */</p>
<hr />
<div><big>'''Discovered something unusual in the diagrams? Please leave a comment in the corresponding section!'''</big><br />
<br />
__TOC__<br />
<br />
== General comments about all diagrams ==<br />
* There seem to be some compatibility problems using Google Chrome. Nonetheless, Mozilla Firefox, Netscape, Microsoft Explorer, Safari, and Opera are working properly.<br />
* Comments in brackets have been changed in the original files, but have not been uploaded yet.<br />
<br />
<br/><br />
== Carbon metabolism ==<br />
<br />
=== Central carbon metabolism ===<br />
<br />
*(Please check whether the "y" genes in the diagrams have already new names. For example, yqjH is polY1. If you are on the PolY1 page in subtiwiki and you get the link to the pathway it is not obvious whtat to look for (PolY1) is not in the list. Jörg)<br />
<br />
=== Utilization of different carbon sources === <br />
<br />
*(sugar between gluconate and xylose = '''beta'''-xylosides)<br />
<br />
<br />
<br/><br />
== Nitrogen and amino acid metabolism ==<br />
<br />
=== Ammonium assimilation and glutamate metabolism (incl. glutamine and arginine) ===<br />
<br />
<br />
* die Anordnung der einzelnen Teile in diesem Diagramm ist suboptimal, sie sollten noch mal verschoben werden (Jörg)<br />
*write comments here<br />
<br />
=== Alanine, glycine, serine ===<br />
<br />
* der Glycin-Abbau über gcvT, gcvPA, gcvPB und gcvH fehlt (Jörg)<br />
*write comments here<br />
<br />
=== Aspartate, asparagine ===<br />
<br />
* (warum ist YveA hier nicht drin?)<br />
* write comments here<br />
<br />
=== Cysteine, methionine ===<br />
<br />
* Eventuell Einbindung von Extramarkern für die S-Box (bzw. alle riboswitches)???? Es gibt ja dafür extra Seiten im Subtiwiki.<br />
<br />
=== Histidine ===<br />
<br />
*Description for HutU<br />
<br />
=== Isoleucine, valine, leucine ===<br />
<br />
*(beim Abbau Acyl-'''C'''oA nicht coA)<br />
<br />
=== Lysine, threonine ===<br />
<br />
* (SpoVF hieß das früher, jetzt sind es zwei Proteine (SpoVFA und SpoVFB), die kommen ja auch im Regulationsteil vor und sind richtig zu SubtiWiki verlinkt. Man sollte da also oben auch den Komplex aus beiden reinmachen und dann das Popup-Fenster entspechend verändern. Ich kopiere diese Message auhc mal auf die SubtiPathways-Wishlist, dann könnte das in einer größeren Überarbeitungsaktion mal in Angriff genommen werden.)<br />
* Lysin-Abbau fehlt (Jörg)<br />
<br />
=== Phenylalanine, tyrosine, tryptophan ===<br />
<br />
* (pyr rot)<br />
* (Reaktionen Chorismat ---> Folat bzw. Menachinon stimmen nicht (sind viel komplizierter, dafür gibt es auch eigene Diagramme, am besten beide hier raus nehmen)) --> hab die Proteine an diesen Reaktionen herausgenommen und die Reaktionspfeile ersetzt, jetzt wird symbolisiert, dass bekannte Reaktionen zu Chorismat und Menachinon führen --> jetzt vielleicht Verlinkung zu den entsprechenden Diagrammen?<br />
<br />
=== Proline ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Nucleotides ==<br />
<br />
=== Gene regulation of nucleotides ===<br />
<br />
*(dut nicht in SubtiWiki --> ist vermutlich yncF (dUTP diphosphatase, Bezeichnung dut aus Paper Goelzer), im Diagramm ändern, Dut als Synonym übernehmen?)<br />
*(RpsA nicht in SubtiWiki --> ist vermutlich ypfD (RpsA = Homolog aus E.coli, Bezeichnung aus Paper Goelzer), im Diagramm ändern!)<br />
<br />
=== Nucleosides catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine metabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine catabolism ===<br />
<br />
*write comments here<br />
<br />
=== Purine salvage pathways ===<br />
<br />
*(RelA muss groß geschrieben werden)<br />
* GucA nicht in SubtiWiki<br />
<br />
=== Pyrimidine metabolism ===<br />
<br />
*write comments here<br />
<br />
<br />
<br/><br />
== Metabolism of cofactors ==<br />
<br />
=== CoA synthesis ===<br />
<br />
*write comments here<br />
<br />
=== Folate biosynthesis ===<br />
<br />
*write comments here<br />
<br />
=== Menaquinone ===<br />
<br />
*write comments here<br />
<br />
<br/><br />
== Other pathways ==<br />
<br />
=== Cellwall ===<br />
<br />
*write comments here<br />
<br />
=== Stress response ===<br />
<br />
* (PurP muss PurS sein)<br />
* (SpoVt muss SpoVT sein)<br />
* (sigB groß)<br />
* sigF groß<br />
* glutamate (bei Prolinsynthese) lila<br />
<br />
=== Sulfate assimilation ===<br />
<br />
*write comments here<br />
<br />
=== tRNA charging ===<br />
<br />
*Arne, wir hatten doch eine Extra-Diskussion über die Rolle von TilS. Das fehlt hier aber! Jörg</div>
Aschmei