rbsD

ribose [SW|ABC transporter] (membrane protein)

locus: BSU_35930

pI: 4.99

mw: 14.09 kDa

protein length: 131 aa

gene length: 396 bp

function: ribose uptake

product: ribose [SW|ABC transporter] (membrane protein)

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
• [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.4|Utilization of ribose]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 3,703,271 → 3,703,666

The protein

Catalyzed reaction/ biological activity

• β-D-ribopyranose --> β-D-ribofuranose (according to UniProt)

Protein family

• RbsD / FucU family (single member, according to UniProt)

Structure

• [PDB|1OGD] (complex with D-ribose)

[SW|Localization]

• cell membrane [Pubmed|10092453]

Expression and Regulation

Operons

• genes: [gene|77AEAC0F06B4D5F062D4A2740794B7BFDDA31096|rbsR]-[gene|C229BD2C00B169CF4A99482E65B3F749AD9D51D8|rbsK]-[gene|F0E6F191FAF8F279462B09BF1FE4C6C752A57803|rbsD]-[gene|AB4A686F62550F90F5BD8D27DAADC9C33F1DA1DB|rbsA]-[gene|F1258E31151E137A850811B0C851D473CEFFD43B|rbsC]-[gene|1D67888E79B09956F9258F4068546D8C67103549|rbsB]
  description: [Pubmed|7921236]

  sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|7511775], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

  regulatory mechanism

  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|7921236], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: activation, [Pubmed|7592460], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

  regulation

  • expressed upon transition into the stationary phase ([protein|search|AbrB]) [Pubmed|7592460]

Biological materials

Mutant

• BKE35930 (Δ[gene|F0E6F191FAF8F279462B09BF1FE4C6C752A57803|rbsD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE35930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GCTGTTCAGTATACCGTGTT, downstream forward: _UP4_CTTTTCTAGAAAGGAAGATG
• BKK35930 (Δ[gene|F0E6F191FAF8F279462B09BF1FE4C6C752A57803|rbsD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK35930 BGSC], [Pubmed|28189581], upstream reverse: _UP1_GCTGTTCAGTATACCGTGTT, downstream forward: _UP4_CTTTTCTAGAAAGGAAGATG

References

• 10092453,16872404,7592460,12738765,7921236,7511775