SubtiBank SubtiBank
yxeD
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yxeD

sporulation protein
locus
BSU_39590
pI
6.39
mw
13.49 kDa
protein length
117 aa Sequence Blast
gene length
354 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]

    • Gene

    Coordinates
    4,066,210 → 4,066,563

    Expression and Regulation

    Operons

    genes
    [gene|EB1C3DD517FA7990BACDDF7C2EED9054A7FBC771|yxeD]
    description
    [Pubmed|10746760]

    sigma factors

  • [protein|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE]: sigma factor, [Pubmed|15699190], in [regulon|3CB24D493B3282278B7DC61CE3C793DFA815F9E2|SigE regulon]
  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|16497325], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

    • regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • expressed during sporulation ([protein|search|SigE], [protein|search|SigG]) [Pubmed|15699190,16497325]
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    additional information

  • the mRNA belongs to the 46 most abundant mRNA species in dormant spores [pubmed|30782632]

    • Biological materials

    Mutant

  • MGNA-B777 (yxeD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1776 NBRP B. subtilis, Japan]
  • BKE39590 (Δ[gene|EB1C3DD517FA7990BACDDF7C2EED9054A7FBC771|yxeD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39590 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGAATGATCCCTCCATGT, downstream forward: _UP4_TAACATATAAAAAGCTCAAC
  • BKK39590 (Δ[gene|EB1C3DD517FA7990BACDDF7C2EED9054A7FBC771|yxeD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39590 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGAATGATCCCTCCATGT, downstream forward: _UP4_TAACATATAAAAAGCTCAAC

    • References

  • 15699190,16497325,10746760,220817675,30782632