ydbS

resistence against antimicrobial compounds from B. amyloliquefaciens

locus: BSU_04590

pI: 8.13

mw: 17.98 kDa

protein length: 159 aa

gene length: 480 bp

function: confers resistence against antimicrobial compounds from B. amyloliquefaciens

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.13|Resistance against toxins/ antibiotics]
• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 512,814 → 513,293

The protein

Protein family

• UPF0699 family (with [protein|15CD9023540E3BB7D3EC8A60E204052DD256CE9F|YdbT], according to UniProt)

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|E4139214AB491712309F84A0792BCD8939F634D7|ydbS]-[gene|15CD9023540E3BB7D3EC8A60E204052DD256CE9F|ydbT]
  description: [Pubmed|11866510]

  sigma factors

  • [protein|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW]: sigma factor, [Pubmed|12207695], in [regulon|3D974DD2967C7F8FD4E3C2AF42617B8AE9F0296D|SigW regulon]

Biological materials

Mutant

• MGNA-C100 (ydbS::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2098 NBRP B. subtilis, Japan]
• BKE04590 (Δ[gene|E4139214AB491712309F84A0792BCD8939F634D7|ydbS]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04590 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAATACCTACCTCCCTT, downstream forward: _UP4_TCCCGTCTGGCGAGGGTGAC
• BKK04590 (Δ[gene|E4139214AB491712309F84A0792BCD8939F634D7|ydbS]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04590 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAATACCTACCTCCCTT, downstream forward: _UP4_TCCCGTCTGGCGAGGGTGAC

References

• 16629676,12207695,11866510