SubtiBank SubtiBank
ydeM
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

ydeM

similar to dehydratase
locus
BSU_05250
pI
4.91
mw
16.02 kDa
protein length
141 aa Sequence Blast
gene length
426 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]
  • Gene

    Coordinates
    572,974 → 573,399

    The protein

    [SW|Domains]

  • MaoC-like domain (aa 8-112) (according to UniProt)
  • Structure

  • [PDB|3EXZ] (from Rhodospirillum rubrum, 38% identity)
  • Biological materials

    Mutant

  • MGNA-C135 (ydeM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2133 NBRP B. subtilis, Japan]
  • BKE05250 (Δ[gene|E0C883E066E2E04C0464A15A0F3037F7AE102345|ydeM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTTACACCTCTATTTT, downstream forward: _UP4_TAACTCAGAAAGCCCGCTTT
  • BKK05250 (Δ[gene|E0C883E066E2E04C0464A15A0F3037F7AE102345|ydeM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05250 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTCTTACACCTCTATTTT, downstream forward: _UP4_TAACTCAGAAAGCCCGCTTT