SubtiBank SubtiBank
yqfG [2018-06-07 18:08:11]
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yqfG [2018-06-07 18:08:11]

similar to endoribonuclease, required for rRNA maturation
locus
BSU25320
pI
4.19
mw
17.61 kDa
protein length
157 aa Sequence Blast
gene length
471 bp Sequence Blast
function
rRNA maturation
product
putative endoribonuclease
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.2|RNA synthesis and degradation] → [category|SW 3.2.4|RNases] → [category|SW 3.2.4.2|Endoribonucleases]
  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.2|rRNA modification and maturation]
  • [category|SW 6|Groups of genes] → [category|SW 6.1|Essential genes]

    • Gene

    Coordinates
    2,611,808 → 2,612,281

    The protein

    Protein family

  • UPF0054 family (according to Swiss-Prot)

    • Structure

  • [PDB|1TVI] orthologue from ''T. maritima'' (38% identity) [Pubmed|15965736]

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Biological materials

    Mutant

  • BKK25320 (Δ[gene|E0437C86E5F3707FF1DA13C8B98F73130DED8FB4|yqfG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK25320 BGSC], [Pubmed|28189581], upstream reverse: _UP1_AACGATATCAATCAGTAAAC, downstream forward: _UP4_AAGCAAAAGGAATTGCTGGA

    • References

  • 20807199,15965736,21325267,23273979,27834201