SubtiBank SubtiBank
yybD
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yybD

similar to GCN5-related N-acetyltransferase
locus
BSU_40680
pI
6.16
mw
16.42 kDa
protein length
147 aa Sequence Blast
gene length
444 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

    • Gene

    Coordinates
    4,181,456 → 4,181,899

    The protein

    Protein family

  • UPF0039 (ElaA) family (single member, according to UniProt)

    • Paralogous protein(s)

  • [protein|AD0F95A25190DA7E253F4C93BC160B1EA91AAE04|YyaT], [protein|5E4C3ADF5B5D0215E9E350F16BCA57B208933606|YjcF]

    • [SW|Domains]

  • [SW|N-acetyltransferase domain] (aa 1-144) (according to UniProt)

    • Structure

  • [PDB|1Q2Y] (YjcF, 47% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|9EC2800AF5B2B65BE3DEB4ABCCE7E448A24440DF|yybE]-[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]-[gene|33C3EDF3709AC835C9C50B1B7978BA7C23EC9B9E|yybC]
    description
    [pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-B850 (yybD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1849 NBRP B. subtilis, Japan]
  • BKE40680 (Δ[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE40680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTGACATTCATGCTTGAAT, downstream forward: _UP4_TAGATTGTTCACAAATTTGT
  • BKK40680 (Δ[gene|DBEB1E43E1121D3D8AB6A0CA3BAF4072715F6577|yybD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK40680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TTTGACATTCATGCTTGAAT, downstream forward: _UP4_TAGATTGTTCACAAATTTGT