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ydbO

similar to cation efflux system

locus: BSU_04540

pI: 6.23

mw: 31.33 kDa

protein length: 290 aa

gene length: 873 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.12|Other transporters]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 506,866 → 507,738

The protein

Protein family

• [SW|Cation diffusion facilitator (CDF) transporter (TC 2.A.4) family] (according to UniProt)

Paralogous protein(s)

• [protein|72BF9B934CB5800E156263FF377DED0AD2E920A9|MneS], [protein|28C7CFE5701F6920652BE1973DC7A15D7C088E35|MneP]

Structure

• [PDB|5VRF] (from Shewanella oneidensis, 26% identity) [pubmed|29507252]

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C120 (ydbO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2118 NBRP B. subtilis, Japan]
• BKE04540 (Δ[gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATACCAGCCTCCAT, downstream forward: _UP4_ATAAAATAAGGCTGTTTAAC
• BKK04540 (Δ[gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATACCAGCCTCCAT, downstream forward: _UP4_ATAAAATAAGGCTGTTTAAC

References

Research papers

• 29507252