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ydbO
similar to cation efflux system
Genomic Context
categories
[category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.4|Transporters/ other] → [category|SW 1.2.4.12|Other transporters][category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]Gene
Coordinates
506,866 → 507,738
The protein
Protein family
[SW|Cation diffusion facilitator (CDF) transporter (TC 2.A.4) family] (according to UniProt)Paralogous protein(s)
[protein|72BF9B934CB5800E156263FF377DED0AD2E920A9|MneS], [protein|28C7CFE5701F6920652BE1973DC7A15D7C088E35|MneP] Structure
[PDB|5VRF] (from Shewanella oneidensis, 26% identity) [pubmed|29507252][SW|Localization]
cell membrane (according to UniProt)Expression and Regulation
Operons
genes
[gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]
description
[Pubmed|22383849]
view in new tabBiological materials
Mutant
MGNA-C120 (ydbO::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2118 NBRP B. subtilis, Japan]BKE04540 (Δ[gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATACCAGCCTCCAT, downstream forward: _UP4_ATAAAATAAGGCTGTTTAACBKK04540 (Δ[gene|D52111E81E9233DABAEFCAF6217145CF6A7F3961|ydbO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04540 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGAATACCAGCCTCCAT, downstream forward: _UP4_ATAAAATAAGGCTGTTTAACReferences