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cspC [2018-06-07 19:23:13]
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cspC [2018-06-07 19:23:13]

cold shock protein
locus
BSU05120
pI
4.52
mw
7.12 kDa
protein length
gene length
198 bp Sequence Blast
function
RNA chaperone
product
cold shock protein
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.2|RNA synthesis and degradation] → [category|SW 3.2.2|RNA chaperones]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.5|Cold stress proteins]
  • Gene

    Coordinates
    559,264 → 559,464

    The protein

    Paralogous protein(s)

  • [protein|0F89D0B03F54B283CDD99A940D43C18E6B5703BB|CspD], [protein|16E048FE5AF76CC771DEBBA8CB56B75A5414B3A2|CspB]
  • Structure

  • [PDB|2I5M] ([protein|16E048FE5AF76CC771DEBBA8CB56B75A5414B3A2|CspB], 71% identity)
  • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)
  • Expression and Regulation

    Operons

    genes
    [gene|D453E1E7D4256B56AFB2149731E08B104D59431B|cspC]
    description
    [pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • BKE05120 (Δ[gene|D453E1E7D4256B56AFB2149731E08B104D59431B|cspC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05120 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTGTTGCCTCCTAGT, downstream forward: _UP4_TAATCTTCAATCGTTTATAC
  • BKK05120 (Δ[gene|D453E1E7D4256B56AFB2149731E08B104D59431B|cspC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05120 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTGTTGCCTCCTAGT, downstream forward: _UP4_TAATCTTCAATCGTTTATAC
  • two-hybrid system

  • B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in [SW|Stülke] lab
  • References

  • 12399512,12171653,11752341,11717297,12838604,9379903,9914312,11591689,9920884,12427936