SubtiBank SubtiBank
comFB
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comFB

late competence gene
locus
BSU_35460
pI
4.83
mw
10.84 kDa
protein length
98 aa Sequence Blast
gene length
297 bp Sequence Blast
function
compentence
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.7|Genetic competence]
  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.3|Genetic competence]

    • Gene

    Coordinates
    3,641,811 → 3,642,107

    The protein

    [SW|Cofactors]

  • Zn2 [Pubmed|25423369]

    • Structure

  • [PDB|4WAI] [Pubmed|25423369]

    • [SW|Localization]

  • forms dimers [Pubmed|25423369]
  • cytoplasma [Pubmed|25423369]
  • localizes to one or both cell poles [Pubmed|21278288]

    • Expression and Regulation

    Operons

    genes
    [gene|45F27C0789199626BA90D2C69E8F13525C911478|comFA]-[gene|D290247A43280532947B707F3AF388D7A7F404D3|comFB]-[gene|04D9D70C0BCFDCBD00B5156908C348135080A9C2|comFC]-[gene|049B1EBF64F0EBC04CE6D529C8EDB0B6B2184DF5|yvyF]-[gene|F03144BF8A187C8931938A21433431B8961E8EE7|flgM]-[gene|6F4CD36D4C1EE99EF7A503F44F53AEB8EFFEAB7F|yvyG]-[gene|767ADBEF1B40CB3C74116CEA8CFB2FAF19C1FE7B|flgK]-[gene|82AB04023BCB57967C7501E6AEAC4BB593AA6480|flgL]-[gene|E5A59D2AF53FA220BA98D9653589A8F0D24F75B8|yviE]-[gene|6A6CBD75DCC33C804F853F47D37773930D398CFE|fliW]-[gene|93F328524989597C7D2329B25E665496C9631E87|csrA]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|8412657], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD]: sigma factor, [Pubmed|8045879], in [regulon|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD regulon]

    • regulatory mechanism

  • [protein|08CFA2C72931A75532D4289BC1D18A826DE9F9CA|ComK]: activation, [Pubmed|8412657], in [regulon|08CFA2C72931A75532D4289BC1D18A826DE9F9CA|ComK regulon]
  • [protein|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU]: activation, [protein|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU]-P, [Pubmed|21736639], in [regulon|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU regulon]
  • [protein|F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|ScoC]: repression, [Pubmed|19898538], in [regulon|F7FD94CE7AB290FBFD3A9B88F204961668F9B42C|ScoC regulon]
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    Biological materials

    Mutant

  • BKE35460 (Δ[gene|D290247A43280532947B707F3AF388D7A7F404D3|comFB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE35460 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTACAGCTCCTCATC, downstream forward: _UP4_AAGCAGGAGGAGGCATTCAT
  • BKK35460 (Δ[gene|D290247A43280532947B707F3AF388D7A7F404D3|comFB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK35460 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTTTACAGCTCCTCATC, downstream forward: _UP4_AAGCAGGAGGAGGCATTCAT

    • References

  • 11814663,8412657,21278288,25423369