SubtiBank SubtiBank
trmR [2018-07-16 13:23:58]
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trmR [2018-07-16 13:23:58]

similar to caffeoyl-CoA O-methyltransferase
locus
BSU27360
pI
5.57
mw
24.92 kDa
protein length
217 aa Sequence Blast
gene length
651 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
yrrM
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.8|tRNA modification and maturation]

    • Gene

    Coordinates
    2,795,082 → 2,795,735

    The protein

    Protein family

  • Type 3 family (according to Swiss-Prot)

    • Structure

  • [PDB|5ZW3] [pubmed|29982645]
  • [PDB|5ZW4] (bound to tRNA) [pubmed|29982645]

    • Expression and Regulation

    Operons

    genes
    [gene|CE4F2965077F2A5882432D683520E09B70B9369A|trmR]-[gene|A3EC327DA14F188E88AF4221B51EE5950F882277|yrrN]-[gene|D4046AA4C4ACB6A0A2F2020CA1E659F65CAFE68D|yrrO]-[gene|A659D9894E777D8A99707CB750DF2918AEE06CE9|udk]-[gene|6FBF27C12B4B3DC2CE373E5199357042114471F8|greA]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-A853 (yrrM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/853 NBRP B. subtilis, Japan]
  • BKE27360 (Δ[gene|CE4F2965077F2A5882432D683520E09B70B9369A|trmR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE27360 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTACAAACAGCCTCCCGT, downstream forward: _UP4_AGTAAAAAGAAGAGGTGAAC
  • BKK27360 (Δ[gene|CE4F2965077F2A5882432D683520E09B70B9369A|trmR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK27360 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTACAAACAGCCTCCCGT, downstream forward: _UP4_AGTAAAAAGAAGAGGTGAAC

    • References

    Research papers

  • 29982645