SubtiBank SubtiBank
yrpD
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yrpD

unknown
locus
BSU_26820
pI
9.96
mw
24.73 kDa
protein length
235 aa Sequence Blast
gene length
708 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 6|Groups of genes] → [category|SW 6.12|Secreted proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]
  • Gene

    Coordinates
    2,739,486 → 2,740,193

    The protein

    Paralogous protein(s)

  • [protein|258DD30EA27B6A2E81B8359E43203C37F588037A|YncM]
  • Structure

  • [PDB|4HFS] (extracellular portion of [protein|258DD30EA27B6A2E81B8359E43203C37F588037A|YncM], 62% identity)
  • [SW|Localization]

  • extracellular (signal peptide) [Pubmed|18957862]
  • Expression and Regulation

    Operons

    genes
    [gene|CB6300378FE7F14A9C7C664A533D73D513857FD7|yrpD]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]
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    Biological materials

    Mutant

  • MGNA-A868 (yrpD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/868 NBRP B. subtilis, Japan]
  • BKE26820 (Δ[gene|CB6300378FE7F14A9C7C664A533D73D513857FD7|yrpD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATTATTTCCCCCTATC, downstream forward: _UP4_TAAAACATGTTAAACATACA
  • BKK26820 (Δ[gene|CB6300378FE7F14A9C7C664A533D73D513857FD7|yrpD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26820 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCATTATTTCCCCCTATC, downstream forward: _UP4_TAAAACATGTTAAACATACA
  • References

  • 18957862,20817675