SubtiBank SubtiBank
yxlD
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yxlD

negative regulation of [protein|801E92306971E26AD4AB155172B7F4EFDE2F9170|SigY]-directed transcription of the [gene|801E92306971E26AD4AB155172B7F4EFDE2F9170|sigY] operon
locus
BSU_38680
pI
10.27
mw
7.71 kDa
protein length
68 aa Sequence Blast
gene length
207 bp Sequence Blast
function
negative regulation of [protein|801E92306971E26AD4AB155172B7F4EFDE2F9170|SigY]-directed transcription of the [gene|801E92306971E26AD4AB155172B7F4EFDE2F9170|sigY] operon
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.1|Sigma factors and their control] → [category|SW 3.4.1.2|Control of sigma factors]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]

    • Gene

    Coordinates
    3,969,796 → 3,970,002

    Expression and Regulation

    Operons

    genes
    [gene|801E92306971E26AD4AB155172B7F4EFDE2F9170|sigY]-[gene|C07156CBA0AA3BAB24D17D15708FC68E74A854A7|yxlC]-[gene|CAADFAFD4C39362D0D0F242C926AE101C683EB5D|yxlD]-[gene|B40D01DDD9EF8B64E46CA7DBF4BAC3DBF8A73986|yxlE]-[gene|D246F61BEAE0D3D6707B4C43A634C02876CC5395|yxlF]-[gene|DCC03844AC58A198B851B564D0A6459C39EBDA2F|yxlG]
    description
    [Pubmed|14769884]

    sigma factors

  • [protein|801E92306971E26AD4AB155172B7F4EFDE2F9170|SigY]: sigma factor, [Pubmed|12897008], in [regulon|801E92306971E26AD4AB155172B7F4EFDE2F9170|SigY regulon]
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    additional information

  • the mRNA is cleaved by [protein|BAB297D18F94FFA67B8D12A684AB4D1BCDFB4981|RNase III] [PubMed|26883633]

    • Biological materials

    Mutant

  • MGNA-B759 (yxlD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1758 NBRP B. subtilis, Japan]
  • BKE38680 (Δ[gene|CAADFAFD4C39362D0D0F242C926AE101C683EB5D|yxlD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE38680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGTCATCCGCGTTTCACCTC, downstream forward: _UP4_CAATGAATATTTCTTGGGAA
  • BKK38680 (Δ[gene|CAADFAFD4C39362D0D0F242C926AE101C683EB5D|yxlD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK38680 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGTCATCCGCGTTTCACCTC, downstream forward: _UP4_CAATGAATATTTCTTGGGAA

    • References

  • 14769884,12897008,26883633