SubtiBank SubtiBank
papB
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papB

Xaa-Pro amino-peptidase
locus
BSU13860
pI
5.17
mw
40.18 kDa
protein length
363 aa Sequence Blast
gene length
1092 bp Sequence Blast
function
degradation of proline-containing peptides
product
Xaa-Pro amino-peptidase
essential
no
ec
3.4.11.9
synonyms
ykvY

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.3|Amino acid/ nitrogen metabolism] → [category|SW 2.3.3|Utilization of nitrogen sources other than amino acids] → [category|SW 2.3.3.4|Utilization of peptides]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.6|Coping with hyper-osmotic stress]
  • Gene

    Coordinates
    1,453,691 → 1,454,782

    The protein

    Protein family

  • peptidase M24B family (according to Swiss-Prot)
  • Paralogous protein(s)

  • [protein|33886A1EAC13B684E92BF94201C46617AD2844B3|PapA]
  • Structure

  • [PDB|3Q6D] (''B. anthracis'' Xaa-Pro dipeptidase, 35% identity, 55% similarity)
  • Expression and Regulation

    Operons

    genes
    [gene|C95EEAC79B9E823BBBCF6B1960DABCCBB2AC03A4|papB]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|C95EEAC79B9E823BBBCF6B1960DABCCBB2AC03A4|papB]-[gene|6FDE01EEFCDB2F949A902DFD76A341410B867E88|ykvZ]-[gene|BC0DF593AE969F1DBC5E9E2BACF1C00BE4FEE449|glcT]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B330 (ykvY::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1329 NBRP B. subtilis, Japan]
  • BKE13860 (Δ[gene|C95EEAC79B9E823BBBCF6B1960DABCCBB2AC03A4|papB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE13860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTCTTGTTCCTCCCTGC, downstream forward: _UP4_TAATAGAAATAAAAAAGGAC
  • BKK13860 (Δ[gene|C95EEAC79B9E823BBBCF6B1960DABCCBB2AC03A4|papB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK13860 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACTTCTTGTTCCTCCCTGC, downstream forward: _UP4_TAATAGAAATAAAAAAGGAC
  • References

  • 23144141