SubtiBank SubtiBank
yqeC [2017-10-19 17:23:06]
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yqeC [2017-10-19 17:23:06]

similar to 3-hydroxyisobutyrate dehydrogenase
locus
BSU25730
pI
5.82
mw
32.62 kDa
protein length
297 aa Sequence Blast
gene length
891 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]
  • [category|SW 6|Groups of genes] → [category|SW 6.6|Poorly characterized/ putative enzymes]

    • Gene

    Coordinates
    2,650,487 → 2,651,380

    The protein

    Protein family

  • 6-phosphogluconate dehydrogenase family (according to Swiss-Prot)

    • Paralogous protein(s)

  • [protein|7E7187AA2DC172018A63A7B9CE48124F30311639|GntZ] (36,5%)

    • Structure

  • [PDB|4E21] (from Geobacter Metallireducens 37% identity)

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|C6CB4993032D8C2CC79A06C67925096F0AFE48CB|yqeC]
    description
    [pubmed|22383849]

    regulation

  • expressed during [SW|sporulation] [pubmed|22383849]
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    Biological materials

    Mutant

  • BKE25730 (Δ[gene|C6CB4993032D8C2CC79A06C67925096F0AFE48CB|yqeC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE25730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCTGTTCCTCCTGATT, downstream forward: _UP4_AAGTAAGGGGGCCAACAAGC
  • BKK25730 (Δ[gene|C6CB4993032D8C2CC79A06C67925096F0AFE48CB|yqeC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK25730 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCTGTTCCTCCTGATT, downstream forward: _UP4_AAGTAAGGGGGCCAACAAGC