SubtiBank SubtiBank
rbsK [2018-11-23 17:17:02]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

rbsK [2018-11-23 17:17:02]

ribokinase
locus
BSU35920
pI
4.61
mw
30.99 kDa
protein length
293 aa Sequence Blast
gene length
879 bp Sequence Blast
function
ribose utilization
product
ribokinase
essential
no
ec
2.7.1.15
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.4|Utilization of ribose]

    • Gene

    Coordinates
    3,702,393 → 3,703,274

    The protein

    Catalyzed reaction/ biological activity

  • ATP + D-ribose = ADP + D-ribose 5-phosphate (according to Swiss-Prot)

    • Protein family

  • carbohydrate kinase pfkB family (according to Swiss-Prot)

    • Structure

  • [PDB|1VM7] (the enzyme of ''Thermotoga maritima'', 38% identity)

    • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|77AEAC0F06B4D5F062D4A2740794B7BFDDA31096|rbsR]-[gene|C229BD2C00B169CF4A99482E65B3F749AD9D51D8|rbsK]-[gene|F0E6F191FAF8F279462B09BF1FE4C6C752A57803|rbsD]-[gene|AB4A686F62550F90F5BD8D27DAADC9C33F1DA1DB|rbsA]-[gene|F1258E31151E137A850811B0C851D473CEFFD43B|rbsC]-[gene|1D67888E79B09956F9258F4068546D8C67103549|rbsB]
    description
    [Pubmed|7921236]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|7511775], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]

    • regulatory mechanism

  • [protein|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA]: repression, [Pubmed|7921236], in [regulon|E39AFEB7B7F28969A35C4B51CC6E7819F71C79D9|CcpA regulon]
  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: activation, [Pubmed|7592460], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]

    • regulation

  • expressed upon transition into the stationary phase ([protein|search|AbrB]) [Pubmed|7592460]
    • view in new tab

    Biological materials

    Mutant

  • BKE35920 (Δ[gene|C229BD2C00B169CF4A99482E65B3F749AD9D51D8|rbsK]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE35920 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACCAATCACACAAATATTAC, downstream forward: _UP4_AATGAAGTAGAGGAGCTGCT
  • BKK35920 (Δ[gene|C229BD2C00B169CF4A99482E65B3F749AD9D51D8|rbsK]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK35920 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACCAATCACACAAATATTAC, downstream forward: _UP4_AATGAAGTAGAGGAGCTGCT

    • References

  • 16872404,7511775,7592460,7921236