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yocH
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yocH

peptidoglycan hydrolase (amidase)
Locus
BSU_19210
Isoelectric point
8.37
Molecular weight
30.03 kDa
Protein length
287 aa Sequence Blast
Gene length
864 bp Sequence Blast
Function
cell wall turnover
Product
peptidoglycan hydrolase
Essential
no
Synonyms

Genomic Context

      
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Categories containing this gene/protein

Gene

Coordinates
2,092,899 → 2,093,762

The protein

Domains

  • contains two N-acetylglucosamine-polymer-binding LysM domains PubMed
  • 2 LysM domains (aa 26-69, aa 78-121) (according to UniProt)
  • Structure

  • 4WLK (YuiC, corresponds to aa 155 ... 286 of YocH, 34% identity) PubMed
  • Localization

  • extracellular (signal peptide) PubMed
  • Expression and Regulation

    Operons

    Genes
    Description

    Sigma factors

  • SigA: sigma factor, PubMed, in SigA regulon
  • Regulatory mechanism

  • Spo0A: activation, PubMed, in Spo0A regulon
  • AbrB: repression, PubMed, in AbrB regulon
  • WalR: activation, PubMed, in WalR regulon
  • Regulation

  • expression is modulated in response to D,L-endopeptidase activity (increased upon reduced activity in the absence of CwlO or FtsE-FtsX, decreased upon overexpression of LytE) (WalR) PubMed
  • expressed under conditions that trigger sporulation (Spo0A) PubMed
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    Biological materials

    Mutant

  • MGNA-A321 (yocH::erm), available at the NBRP B. subtilis, Japan
  • AH023 knock-out mutant (kan), available in Kevin Devine's and Jörg Stülke's labs PubMed
  • BKE19210 (yocH::erm, available in the BGSC and in Jörg Stülke's lab) PubMed
  • BKE19210 (ΔyocH::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATAAGTAAATCCTCCCTTG, downstream forward: _UP4_TAATAATATAGATTGTGATA
  • BKK19210 (ΔyocH::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATAAGTAAATCCTCCCTTG, downstream forward: _UP4_TAATAATATAGATTGTGATA
  • Expression vectors

  • pGP1691, expression of yocH-Strep in B. subtilis, in pGP382, available in Jörg Stülke's lab
  • pGP1693, expression of yocH-Strep in E. coli, in pGP574, available in Jörg Stülke's lab
  • Labs working on this gene/protein

    References

    Reviews

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    Original publications

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