SubtiBank SubtiBank
ytzE
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ytzE

similar to transcriptional regulator ([SW|DeoR family])
locus
BSU_30020
pI
10.52
mw
8.36 kDa
protein length
73 aa Sequence Blast
gene length
222 bp Sequence Blast
function
unknown
product
putative transcription factor
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

    • Gene

    Coordinates
    3,072,401 → 3,072,622

    The protein

    [SW|Domains]

  • [SW|HTH deoR-type domain] (aa 8-63) (according to UniProt)

    • Structure

  • [PDB|4HX4] ([protein|FF34DC303E8A7C9FAA205A6C2924961963B14EB1|MntR], 26% identity) [pubmed|23298157]

    • Biological materials

    Mutant

  • BKE30020 (Δ[gene|BE4AE7892B544A974D6BA5BD5A5D5BE631699AAA|ytzE]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAAACCACTCCCTATCA, downstream forward: _UP4_TAAATTGAAAATTACATAGG
  • BKK30020 (Δ[gene|BE4AE7892B544A974D6BA5BD5A5D5BE631699AAA|ytzE]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30020 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAAACCACTCCCTATCA, downstream forward: _UP4_TAAATTGAAAATTACATAGG
  • GP2583 (Δ[gene|BE4AE7892B544A974D6BA5BD5A5D5BE631699AAA|ytzE]::tet comIQ12L) (in DK1042) available at [SW|Jörg Stülke]'s lab

    • References

    Research papers

  • 23298157