SubtiBank SubtiBank
yxiD
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yxiD

toxin
locus
BSU_39300
pI
9.40
mw
64.13 kDa
protein length
569 aa Sequence Blast
gene length
1710 bp Sequence Blast
function
unknown
product
toxin
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.17|Toxins, antitoxins and immunity against toxins] → [category|SW 4.3.17.2|Type 2 TA systems]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]

    • Gene

    Coordinates
    4,036,784 → 4,038,493

    The protein

    [SW|Domains]

  • [SW|LXG domain] (aa 1-235) (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|75B0239578C92D4F3B298CBB077635BF5567C590|yxiB]-[gene|F44437883F39E5240D36340A7DD07803C5090ABB|yxiC]-[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]-[gene|0DAFBDDC5E41592D06F97D404E75AF14B6783729|yxxD]-[gene|2710D9FD5FA50E09B4E482C13140F69B13C71861|yxxE]
    description
    [Pubmed|22383849,7883710,10746760]
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    Biological materials

    Mutant

  • MGNA-B717 (yxiD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1716 NBRP B. subtilis, Japan]
  • BKE39300 (Δ[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG, downstream forward: _UP4_AAATGAGTTATAATTTTATA
  • BKK39300 (Δ[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG, downstream forward: _UP4_AAATGAGTTATAATTTTATA

    • References

  • 7883710,10746760,22200572