SubtiBank SubtiBank
yxiD
The second international online conference #Subtillery2021 will be held 14th - 18th June - save the date, for more information see the conference website!

The 21st International Conference on Bacilli has been postponed to 2022 and will take place in Prague.

yxiD

toxin
locus
BSU_39300
pI
9.40
mw
64.13 kDa
protein length
569 aa Sequence Blast
gene length
1710 bp Sequence Blast
function
unknown
product
toxin
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.17|Toxins, antitoxins and immunity against toxins] → [category|SW 4.3.17.2|Type 2 TA systems]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]
  • Gene

    Coordinates
    4,036,784 → 4,038,493

    The protein

    [SW|Domains]

  • [SW|LXG domain] (aa 1-235) (according to UniProt)
  • Expression and Regulation

    Operons

    genes
    [gene|75B0239578C92D4F3B298CBB077635BF5567C590|yxiB]-[gene|F44437883F39E5240D36340A7DD07803C5090ABB|yxiC]-[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]-[gene|0DAFBDDC5E41592D06F97D404E75AF14B6783729|yxxD]-[gene|2710D9FD5FA50E09B4E482C13140F69B13C71861|yxxE]
    description
    [Pubmed|22383849,7883710,10746760]
    view in new tab

    Biological materials

    Mutant

  • MGNA-B717 (yxiD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1716 NBRP B. subtilis, Japan]
  • BKE39300 (Δ[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE39300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG, downstream forward: _UP4_AAATGAGTTATAATTTTATA
  • BKK39300 (Δ[gene|BD8C0563C7123B6DEC1EEB602BDF2C9D92D34991|yxiD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK39300 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATCCCTTGTCCTCCCGCG, downstream forward: _UP4_AAATGAGTTATAATTTTATA
  • References

  • 7883710,10746760,22200572