ykaA

unknown

locus: BSU_12850

pI: 4.91

mw: 23.70 kDa

protein length: 205 aa

gene length: 618 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]

Gene

Coordinates: 1,350,482 → 1,351,099

The protein

Protein family

• UPF0111 family (single member, according to UniProt)

Structure

• [PDB|3L39] (from Bacteroides thetaiotamicron, 28% identity)

Expression and Regulation

Operons

• genes: [gene|BBA93C5BAA044DA61A2D1E0EE850A12391E8A3E3|ykaA]-[gene|BBFA6A5EE16CE6203AF89573F87678395277C9E8|pit]
  description: [Pubmed|22383849]

  regulatory mechanism

  • [protein|2C54FE2ADC82FF414D732018C90649D477A925AD|Spo0A]: repression, [Pubmed|14651647], in [regulon|2C54FE2ADC82FF414D732018C90649D477A925AD|Spo0A regulon]

  regulation

  • repressed under conditions that trigger sporulation ([SW|Spo0A]) [Pubmed|14651647]

Biological materials

Mutant

• MGNA-B307 (ykaA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1306 NBRP B. subtilis, Japan]
• BKE12850 (Δ[gene|BBA93C5BAA044DA61A2D1E0EE850A12391E8A3E3|ykaA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12850 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAAACCCTCCATAGT, downstream forward: _UP4_TAACGAGGGGTAAAAATGGA
• BKK12850 (Δ[gene|BBA93C5BAA044DA61A2D1E0EE850A12391E8A3E3|ykaA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12850 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTAAAAACCCTCCATAGT, downstream forward: _UP4_TAACGAGGGGTAAAAATGGA

References

• 14651647