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yfkR [2018-07-31 10:14:37]
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yfkR [2018-07-31 10:14:37]

part of the YfkQ-YfkR-YfkT germinant receptor of unknown specificity
locus
BSU07780
pI
9.66
mw
42.64 kDa
protein length
384 aa Sequence Blast
gene length
1152 bp Sequence Blast
function
germination
product
part of the YfkQ-YfkR-YfkT germinant receptor
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.5|Germination/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    847,498 → 848,652

    The protein

    Protein family

  • gerABKC lipoprotein family (according to Swiss-Prot)

    • [SW|Localization]

  • cell membrane (according to Swiss-Prot)

    • Expression and Regulation

    Operons

    genes
    [gene|7CE0CAF27B1C0F507E783B8B80622270B00634FD|yfkQ]-[gene|B7EEC1910715507596734540D24B3C93B4B7065F|yfkR]-[gene|AA76BEF6A4CECB5D3910918E8D91D8B919EDEA7E|yfkS]-[gene|7A62875A659B9F0967C392F38895D9E15A29D559|yfkT]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|15699190], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]
  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]

    • regulation

  • expressed during [SW|sporulation] in the forespore [Pubmed|15699190]
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    Biological materials

    Mutant

  • MGNA-C258 (yfkR::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2256 NBRP B. subtilis, Japan]
  • BKE07780 (Δ[gene|B7EEC1910715507596734540D24B3C93B4B7065F|yfkR]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE07780 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACAAATGAGAAGCGGCAAAA, downstream forward: _UP4_AGCCATTAATGGAGGTGCGT
  • BKK07780 (Δ[gene|B7EEC1910715507596734540D24B3C93B4B7065F|yfkR]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK07780 BGSC], [Pubmed|28189581], upstream reverse: _UP1_ACAAATGAGAAGCGGCAAAA, downstream forward: _UP4_AGCCATTAATGGAGGTGCGT

    • References

  • 15699190,22383849,10762253