ydhC

similar to transcriptional regulator ([SW|GntR family])

locus: BSU_05700

pI: 5.79

mw: 26.25 kDa

protein length: 224 aa

gene length: 675 bp

function: unknown

product: transcriptional regulator ([SW|GntR family])

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]

Gene

Coordinates: 615,871 → 616,545

The protein

Protein family

• [SW|GntR family] of transcription factors

[SW|Domains]

• [SW|HTH gntR-type domain] (aa 10-77) (according to UniProt)

Structure

• [PDB|6AZ6] ([protein|1C566E54F8EF1A17A365FC49DFDA452AC5D0CA64|GntR] from Streptococcus agalactiae, 30% identity) [pubmed|29269393]

Expression and Regulation

Operons

• genes: [gene|B585209B07593C1078ED6DA1741B808E13B0B625|ydhC]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C178 (ydhC::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2176 NBRP B. subtilis, Japan]
• BKE05700 (Δ[gene|B585209B07593C1078ED6DA1741B808E13B0B625|ydhC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATATAATACCTCTTTTG, downstream forward: _UP4_TGATTTGTATGATCCGGTAC
• BKK05700 (Δ[gene|B585209B07593C1078ED6DA1741B808E13B0B625|ydhC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05700 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATATAATACCTCTTTTG, downstream forward: _UP4_TGATTTGTATGATCCGGTAC

References

• 23504016,29269393