SubtiBank SubtiBank
ydfD
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ydfD

similar to transcriptional regulator ([SW|MocR/ GabR family])
locus
BSU_05370
pI
9.10
mw
54.07 kDa
protein length
482 aa Sequence Blast
gene length
1449 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.2|Transcription factors and their control] → [category|SW 3.4.2.6|Transcription factor/ other/ based on similarity]
  • Gene

    Coordinates
    583,589 → 585,037

    The protein

    Protein family

  • [SW|class-I pyridoxal-phosphate-dependent aminotransferase family] (according to UniProt)
  • [SW|MocR/ GabR family] [Pubmed|22020104]
  • Paralogous protein(s)

  • [protein|6A3F08CD939CCDEC1F784D658B815A6D0E1AAC3D|YisV]
  • [SW|Domains]

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
  • [SW|HTH gntR-type domain] (aa 12-80) (according to UniProt)
  • [SW|Cofactors]

  • PLP
  • Structure

  • [PDB|1WST] (aminotransferase from Thermococcus profundus, 30% identity)
  • Biological materials

    Mutant

  • MGNA-C144 (ydfD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2142 NBRP B. subtilis, Japan]
  • BKE05370 (Δ[gene|B1A95EAE40AFA40BF12EE9B41287921417A39562|ydfD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT
  • BKK05370 (Δ[gene|B1A95EAE40AFA40BF12EE9B41287921417A39562|ydfD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05370 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT
  • References

  • 11756427,22020104