SubtiBank SubtiBank
ydfD
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ydfD

similar to transcriptional regulator (MocR/ GabR family)
Locus
BSU_05370
Isoelectric point
9.10
Molecular weight
54.07 kDa
Protein length
482 aa Sequence Blast
Gene length
1449 bp Sequence Blast
Function
unknown
Product
unknown
Essential
no
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Information processing → Regulation of gene expression → Transcription factors and their control → Transcription factor/ other/ based on similarity

    • Gene

    Coordinates
    583,589 → 585,037

    The protein

    Protein family

  • class-I pyridoxal-phosphate-dependent aminotransferase family (according to UniProt)
  • MocR/ GabR family PubMed

    • Paralogous protein(s)

  • YisV

    • Domains

  • N-terminal DNA-binding helix-turn-helix motif; C-terminal domain is homologous to PLP-binding large domain of aminotransferases.
  • HTH gntR-type domain (aa 12-80) (according to UniProt)

    • Cofactors

  • PLP

    • Structure

  • 1WST (aminotransferase from Thermococcus profundus, 30% identity)

    • Biological materials

    Mutant

  • MGNA-C144 (ydfD::erm), available at the NBRP B. subtilis, Japan
  • BKE05370 (ΔydfD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT
  • BKK05370 (ΔydfD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATAGAATCGGTCTCCTTAA, downstream forward: _UP4_TAACTTTTATATCCTTAAAT

    • References

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