SubtiBank SubtiBank
yqiK [2017-8-11 16:0:3]
You are currently viewing an outdated version of SubtiWiki. Please use the newest version!

yqiK [2017-8-11 16:0:3]

cytoplasmic glycerophosphodiester phosphodiesterase
locus
BSU24180
pI
6.43
mw
26.81 kDa
protein length
239 aa Sequence Blast
gene length
717 bp Sequence Blast
function
unknown
product
cytoplasmic glycerophosphodiester phosphodiesterase
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 2|Metabolism] → [category|SW 2.4|Lipid metabolism] → [category|SW 2.4.1|Utilization of lipids] → [category|SW 2.4.1.2|Utilization of phospholipids/ based on similarity]
  • Gene

    Coordinates
    2,514,169 → 2,514,900

    The protein

    Paralogous protein(s)

  • [protein|E9BEF368F8E55888AD4849E8906E517831A882DF|GlpQ], [protein|04CACAF4F786090AB67D7C606C944F07B7A7FE55|YhdW]
  • Structure

  • [PDB|2PZ0] (GdpP from Thermoanaerobacter tengcongensis, 43% identity) [pubmed|18214974]
  • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)
  • Expression and Regulation

    Operons

    genes
    [gene|AEA18C431FE13FC34671E673DC6733B200E342A8|yqiH]-[gene|0AD75864794E597AA9160969ADE6FE0C7ED07B9F|yqiI]-[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]
    description
    [Pubmed|22843846,22383849]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|22843846], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • regulation

  • only expressed under conditions of high osmolarity [Pubmed|32419322,22843846]
  • view in new tab

    genes
    [gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]
    description
    [Pubmed|22383849]
    view in new tab

    Biological materials

    Mutant

  • MGNA-C458 (yqiK::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2456 NBRP B. subtilis, Japan]
  • BKE24180 (Δ''[gene|AF37A0E08AAAA9159DD1F0183A61713EF582E830|yqiK]''::''ermC'') (available in the BGSC and in [SW|Jörg Stülke]'s lab) [pubmed|28189581]
  • References

  • 22383849,22843846,18214974