SubtiBank SubtiBank
yqzO
The second international online conference #Subtillery2021 will be held 14th - 18th June - save the date, for more information see the conference website!

The 21st International Conference on Bacilli has been postponed to 2022 and will take place in Prague.

yqzO

unknown, Skin element
locus
BSU_26259
pI
9.99
mw
5.50 kDa
protein length
gene length
150 bp Sequence Blast
function
unknown
product
unknown
essential
-
synonyms

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.5|Newly identified sporulation proteins (based on transcription profiling)]
  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.3|Skin element]
  • Gene

    Coordinates
    2,693,457 2,693,606

    The protein

    Structure

  • [PDB|4XDI] (from Chlamydomonas reinhardtii, 38% identity in the N-terminal part (68% of YqzO)) [pubmed|26057801]
  • Expression and Regulation

    Operons

    genes
    [gene|A9AACF8F25A1A80B3AE2A94DFC3A0E09012B55E7|yqzO]-[gene|3A89444BA25E4940C4197AACBD8B66BC1C65A493|yqaN]
    description
    [Pubmed|22383849]

    regulation

  • expressed during [SW|sporulation] [Pubmed|22383849]
  • view in new tab

    genes
    [gene|16BEDCFFB1671793061ACE4AC528D3B8EB177DC8|yqaF]-[gene|02216407B5EDB98FAF611E22B2323C819B9D58BB|yqdA]-[gene|03DAF537379754763646AF3AF2AD811B107F5302|yqaG]-[gene|F6AB74740776179E77218DB831FEE03773B7353F|yqaH]-[gene|5EA0F507F949D249D5B5B860861BBEB4197E01C5|yqaI]-[gene|CFCCFD8C6420CC1DD076B091AD3D914FC8AB22D5|yqaJ]-[gene|903E11BD2CFF3EE1A831F0F50F91741893C3DAB8|yqaK]-[gene|AB4AF9BD3E16FD72370AFC82CDD1531518053E6F|yqaL]-[gene|F301EA8201BF27BAFAD4F95EC3A580A91B970B06|yqaM]-[gene|A9AACF8F25A1A80B3AE2A94DFC3A0E09012B55E7|yqzO]-[gene|3A89444BA25E4940C4197AACBD8B66BC1C65A493|yqaN]
    description
    [Pubmed|20889742]

    sigma factors

  • [protein|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA]: sigma factor, [Pubmed|20889742], in [regulon|360F48D576DE950DF79C1A2677B7A35A8D8CC30C|SigA regulon]
  • regulatory mechanism

  • [protein|846161AE54F170075F2B2133A8D56FE39A5AF8D9|SknR]: repression, [Pubmed|20889742], in [regulon|846161AE54F170075F2B2133A8D56FE39A5AF8D9|SknR regulon]
  • regulation

  • not expressed during normal growth ([protein|846161AE54F170075F2B2133A8D56FE39A5AF8D9|SknR]) [Pubmed|20889742]
  • additional information

  • A [protein|search|ncRNA] is predicted between [gene|CFCCFD8C6420CC1DD076B091AD3D914FC8AB22D5|yqaJ] and [gene|5EA0F507F949D249D5B5B860861BBEB4197E01C5|yqaI] [PubMed|20525796]
  • view in new tab

    Biological materials

    Mutant

  • BKE26259 ([gene|A9AACF8F25A1A80B3AE2A94DFC3A0E09012B55E7|yqzO]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE26259 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGCTTTTATATTCGTTTTCT, downstream forward: _UP4_TAAAGCAGTCGTGTCTCTGC
  • BKK26259 ([gene|A9AACF8F25A1A80B3AE2A94DFC3A0E09012B55E7|yqzO]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK26259 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TGCTTTTATATTCGTTTTCT, downstream forward: _UP4_TAAAGCAGTCGTGTCTCTGC
  • References

  • 20889742,26057801