SubtiBank SubtiBank
ydcI [2018-12-03 17:05:59]
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ydcI [2018-12-03 17:05:59]

unknown
locus
BSU04780
pI
6.77
mw
81.23 kDa
protein length
719 aa Sequence Blast
gene length
2157 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.2|RNA synthesis and degradation] → [category|SW 3.2.5|RNase/ based on similarity]
  • [category|SW 6|Groups of genes] → [category|SW 6.4|Phosphoproteins] → [category|SW 6.4.1|Phosphorylation on an Arg residue]

    • Gene

    Coordinates
    525,743 → 527,902

    The protein

    [SW|Domains]

  • [SW|YqgF/RNase H-like domain] (aa 321 ... 446) (according to the Interpro database)
  • [SW|S1 domain] (aa 646 ... 718) (according to the Interpro database)

    • Modification

  • phosphorylated on Arg-473 [Pubmed|22517742]

    • Structure

  • [PDB|2OCE] (the protein from Pseudomonas aeruginosa, 43% identity)

    • Expression and Regulation

    Operons

    genes
    [gene|A4DB115D36907DE3EE6F80738E4D777838A3FE7F|ydcI]
    description
    [Pubmed|22383849]
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    Biological materials

    Mutant

  • MGNA-C101 (ydcI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2099 NBRP B. subtilis, Japan]
  • BKE04780 (Δ[gene|A4DB115D36907DE3EE6F80738E4D777838A3FE7F|ydcI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04780 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTAACCAAAGCCTCCAA, downstream forward: _UP4_TAAAAGCACTGCTTACGAGC
  • BKK04780 (Δ[gene|A4DB115D36907DE3EE6F80738E4D777838A3FE7F|ydcI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04780 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATGTAACCAAAGCCTCCAA, downstream forward: _UP4_TAAAAGCACTGCTTACGAGC

    • References

  • 22517742,22383849