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ddl [Tue Dec 13 2016 11:16:31 GMT+0100 (CET)]
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ddl [Tue Dec 13 2016 11:16:31 GMT+0100 (CET)]

D-alanine-D-alanine ligase
locus
BSU04560
pI
4.00
mw
38.00 kDa
function
peptidoglycan precursor biosynthesis
product
D-alanine-D-alanine ligase
essential
yes
ec
6.3.2.4
synonyms
ddlA

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.1|Cell wall synthesis] → [category|SW 1.1.1.1|Biosynthesis of peptidoglycan]
  • [category|SW 2|Metabolism] → [category|SW 2.6|Additional metabolic pathways] → [category|SW 2.6.1|Biosynthesis of cell wall components] → [category|SW 2.6.1.1|Biosynthesis of peptidoglycan]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.2|Cell envelope stress proteins (controlled by SigM, V, W, X, Y)]
  • [category|SW 6|Groups of genes] → [category|SW 6.1|Essential genes]
  • [SW|Categories] containing this gene/protein

  • [SW|cell wall synthesis], [SW|biosynthesis of cell wall components], [SW|cell envelope stress proteins (controlled by SigM, V, W, X, Y)], [SW|essential genes]
  • This gene is a member of the following [SW|regulons]

  • [SW|SigM regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    508,248 -> 509,312

    Phenotypes of a mutant

  • essential [Pubmed|12682299]
  • The protein

    Catalyzed reaction/ biological activity

  • ATP 2 D-alanine = ADP phosphate D-alanyl-D-alanine (according to Swiss-Prot)
  • Protein family

  • ATP-grasp domain (according to Swiss-Prot)
  • Structure

  • [PDB|2YZG] (from ''Thermus thermophilus hb8 mutant'', 40% identity, 53% similarity)
  • [SW|Localization]

  • cytoplasm (according to Swiss-Prot)
  • Expression and Regulation

    Operon

  • ''[SW|ddl]-[SW|murF]'' [Pubmed|22383849]
  • [SW|Sigma factor]

  • [protein|search|SigM] [Pubmed|18179421]
  • Regulation

  • expression is reduced in a [protein|search|SigV] mutant [Pubmed|21926231]
  • References

  • 18179421