ydbP

similar to thioredoxin

locus: BSU_04550

pI: 4.39

mw: 12.29 kDa

protein length: 106 aa

gene length: 321 bp

function: unknown

product: unknown

essential: no

synonyms

Genomic Context

categories

• [category|SW 2|Metabolism] → [category|SW 2.1|Electron transport and ATP synthesis] → [category|SW 2.1.4|Electron transport/ other/ based on similarity]

Gene

Coordinates: 507,753 508,073

The protein

Protein family

• [SW|Thioredoxin family] (according to UniProt)

Paralogous protein(s)

• [protein|4E5C84FDC8FE2FEFF47306C91ECAB7F17D3E38E9|TrxA]

[SW|Domains]

• Thioredoxin domain (aa 1-106) (according to UniProt)

Structure

• [PDB|4RUV] (from ''Staphylococcus aureus'', 57% identity)

[SW|Localization]

• cytoplasm (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-C109 (ydbP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2107 NBRP B. subtilis, Japan]
• BKE04550 ([gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE04550 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGTCACATCTCCTTTT, downstream forward: _UP4_ATAAGCTAATTCGTTAAACA
• BKK04550 ([gene|A245594D3F37ACE6B99855DDDFEC27F7F21579E4|ydbP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK04550 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATGTCACATCTCCTTTT, downstream forward: _UP4_ATAAGCTAATTCGTTAAACA

References

• 10482513