yjdI

similiar to Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase

locus: BSU_12060

pI: 8.76

mw: 17.12 kDa

protein length: 159 aa

gene length: 480 bp

function: maturation of tRNA

product: Cys-tRNA(Pro) and Cys-tRNA(Cys) deacylase

essential: no

synonyms

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.3|Protein synthesis, modification and degradation] → [category|SW 3.3.1|Translation] → [category|SW 3.3.1.9|tRNA modification and maturation/ based on similarity]

Gene

Coordinates: 1,277,686 1,278,165

The protein

Protein family

• prolyl-tRNA editing family (single member, according to UniProt)

Structure

• [PDB|2DXA] (from E. coli, 44% identity)

Expression and Regulation

Operons

• genes: [gene|95AAF457B155A56DBD63D0AAB7C986AFBEC5ADEF|yjdI]
  description: [Pubmed|22383849]

Biological materials

Mutant

• MGNA-A257 (yjdI::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/257 NBRP B. subtilis, Japan]
• BKE12060 ([gene|95AAF457B155A56DBD63D0AAB7C986AFBEC5ADEF|yjdI]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12060 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTTTTCACCCACTATC, downstream forward: _UP4_TAGATGCAGATATAGGGGAA
• BKK12060 ([gene|95AAF457B155A56DBD63D0AAB7C986AFBEC5ADEF|yjdI]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12060 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGTTTTCACCCACTATC, downstream forward: _UP4_TAGATGCAGATATAGGGGAA

References

• 15886196,14530268,16087664,24371276