SubtiBank SubtiBank
xkdA
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xkdA

PBSX prophage
locus
BSU_12500
pI
6.69
mw
23.38 kDa
protein length
198 aa Sequence Blast
gene length
597 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ykxA

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.1|PBSX prophage]
  • Gene

    Coordinates
    1,320,570 1,321,166

    Expression and Regulation

    Operons

    genes
    [gene|8FDB136793B51BB646755D507F6C2631D4769D1B|xkdA]
    description
    [Pubmed|16267290]

    sigma factors

  • [protein|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD]: sigma factor, [Pubmed|26577401], in [regulon|7024E4162A6D827069F882FDEACA696EBC05DD40|SigD regulon]
  • regulatory mechanism

  • [protein|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA]: repression, [Pubmed|16267290], in [regulon|D267AF38B0CF107042326E9B8F3DD3C9C85840E4|LexA regulon]
  • regulation

  • induced upon DNA damage ([protein|search|LexA]) [Pubmed|16267290]
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    Biological materials

    Mutant

  • BKE12500 ([gene|8FDB136793B51BB646755D507F6C2631D4769D1B|xkdA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12500 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTGAATACTCCCTTTCG, downstream forward: _UP4_TGATCAAATACGGGCTGAGG
  • BKK12500 ([gene|8FDB136793B51BB646755D507F6C2631D4769D1B|xkdA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12500 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAATTGAATACTCCCTTTCG, downstream forward: _UP4_TGATCAAATACGGGCTGAGG
  • References

  • 16267290,26577401