SubtiBank SubtiBank
xynD
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xynD

arabinoxylan arabinofuranohydrolase
Locus
BSU_18160
Isoelectric point
8.03
Molecular weight
54.33 kDa
Protein length
513 aa Sequence Blast
Gene length
1542 bp Sequence Blast
Function
arabinoxylan degradation
Product
arabinoxylan arabinofuranohydrolase
Essential
no
E.C.
3.2.1.55
Synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      
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Categories containing this gene/protein

  • Metabolism → Carbon metabolism → Utilization of specific carbon sources → Utilization of other polymeric carbohydrates
  • Groups of genes → Secreted proteins

    • Gene

    Coordinates
    1,944,113 1,945,654

    The protein

    Catalyzed reaction/ biological activity

  • Hydrolysis of terminal non-reducing alpha-L-arabinofuranoside residues in alpha-L-arabinosides (according to UniProt)

    • Protein family

  • glycosyl hydrolase 43 family (according to UniProt)

    • Domains

  • CBM6 domain (aa 382-511) (accordig to UniProt)

    • Structure

  • 3C7O PubMed

    • Localization

  • extracellular (signal peptide) PubMed

    • Expression and Regulation

    Operons

    Genes
    xynD-xynC
    Description
    PubMed

    Regulatory mechanism

  • AbrB: repression, PubMed, in AbrB regulon
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    Biological materials

    Mutant

  • BKE18160 (xynD::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCACTTCACATCCTCCTT, downstream forward: _UP4_TAGTACTCGTAATGGGACCG
  • BKK18160 (xynD::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATCACTTCACATCCTCCTT, downstream forward: _UP4_TAGTACTCGTAATGGGACCG

    • References

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