SubtiBank SubtiBank
ytcP [2018-05-04 19:26:25]
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ytcP [2018-05-04 19:26:25]

polygalacturonan and rhamnogalacturonan [SW|ABC transporter] (permease)
locus
BSU30170
pI
9.06
mw
31.54 kDa
protein length
286 aa Sequence Blast
gene length
858 bp Sequence Blast
function
uptake of polygalacturonan and rhamnogalacturonan
product
polygalacturonan and rhamnogalacturonan [SW|ABC transporter] (permease)
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources]
  • [category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin]
  • [category|SW 6|Groups of genes] → [category|SW 6.11|Efp-dependent proteins]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,087,321 → 3,088,181

    The protein

    Protein family

  • CysTW subfamily (according to Swiss-Prot)

    • Structure

  • [PDB|4TQU] (from Sphingomonas sp., 36% identity) [pubmed|26235029]

    • [SW|Localization]

  • cell membrane [Pubmed|10092453]

    • Expression and Regulation

    Operons

    genes
    [gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]-[gene|2D46E89AF6157B49BD443F47DB4A7258F22E8A24|ytcQ]
    description
    [Pubmed|22383849]
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    additional information

  • translation is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]

    • Biological materials

    Mutant

  • MGNA-B536 (ytcP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1535 NBRP B. subtilis, Japan]
  • BKE30170 (Δ[gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC, downstream forward: _UP4_TAAAGAAATATGAAACGGAG
  • BKK30170 (Δ[gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC, downstream forward: _UP4_TAAAGAAATATGAAACGGAG

    • References

  • 10092453,22383849,26235029,29240795