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ytcP
polygalacturonan and rhamnogalacturonan [SW|ABC transporter] (permease)
function
uptake of polygalacturonan and rhamnogalacturonan
product
polygalacturonan and rhamnogalacturonan [SW|ABC transporter] (permease)
Genomic Context
categories
[category|SW 1|Cellular processes] → [category|SW 1.2|Transporters] → [category|SW 1.2.1|ABC transporters] → [category|SW 1.2.1.1|Importers] → [category|SW 1.2.1.1.1|Uptake of carbon sources][category|SW 2|Metabolism] → [category|SW 2.2|Carbon metabolism] → [category|SW 2.2.2|Utilization of specific carbon sources] → [category|SW 2.2.2.26|Utilization of pectin][category|SW 6|Groups of genes] → [category|SW 6.11|Efp-dependent proteins][category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]Gene
Coordinates
3,087,321 3,088,181
The protein
Protein family
[SW|Binding-protein-dependent transport system permease family] (according to UniProt)[SW|CysTW subfamily] (according to UniProt)Paralogous protein(s)
[protein|0A7FF3E2747598AE0EE39183E8827879C4B11A80|LplC] [SW|Domains]
[SW|ABC transmembrane type-1 domain] (aa 69-271) (according to UniProt)Structure
[PDB|4TQU] (from Sphingomonas sp., 36% identity) [pubmed|26235029][SW|Localization]
cell membrane [Pubmed|10092453]Expression and Regulation
Operons
genes
[gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]-[gene|2D46E89AF6157B49BD443F47DB4A7258F22E8A24|ytcQ]
description
[Pubmed|22383849]
view in new tabadditional information
translation is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]Biological materials
Mutant
MGNA-B536 (ytcP::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1535 NBRP B. subtilis, Japan]BKE30170 ([gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE30170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC, downstream forward: _UP4_TAAAGAAATATGAAACGGAGBKK30170 ([gene|87B212C8C61483DF2874762A3B77111616C616A5|ytcP]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK30170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAGTGAATGTGCGATAGCTC, downstream forward: _UP4_TAAAGAAATATGAAACGGAGReferences
10092453,22383849,26235029,29240795