SubtiBank SubtiBank
xkdC
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xkdC

PBSX prophage
locus
BSU_12530
pI
7.97
mw
30.38 kDa
protein length
266 aa Sequence Blast
gene length
801 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
ykxC

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.1|PBSX prophage]
  • Gene

    Coordinates
    1,322,750 1,323,550

    The protein

    Paralogous protein(s)

  • [protein|F301EA8201BF27BAFAD4F95EC3A580A91B970B06|YqaM]
  • Structure

  • [PDB|2W58] ([protein|AC1B507C6B1640E9BEA1F9F01628120F3680C976|DnaI] of Geobacillus kaustophilus, the C-terminus of XkdC, corresponds to aa 89 ... 229, 31% identity) [pubmed|19744498]
  • [SW|Localization]

  • cytoplasm (homogeneous) [Pubmed|16479537]
  • Expression and Regulation

    Operons

    genes
    [gene|677A695D276C25B39B6A8F84664A778305A02C1C|yjzJ]-[gene|AEE450C33EB9966BEC0050FC06B43645CB5FDEF5|xkdB]-[gene|8766A2EE18B75E50C5369AB8B72AD934F82D7545|xkdC]-[gene|F8401768BBDD5EAA68D52119B07AD32FF5B084EE|ykzK]-[gene|FCA8F57256D7048C67D899815975D02FF46BB8BA|xkdD]-[gene|FE1372F14C9E6BBF62DB24E6C27A74B4AE6FDA59|xtrA]
    description
    [Pubmed|22383849,8083174]

    regulatory mechanism

  • [protein|25F494F32E200FC0FE4C81A05B0F70CB449673EA|Xre]: repression, [Pubmed|8083174], in [regulon|25F494F32E200FC0FE4C81A05B0F70CB449673EA|Xre regulon]
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    References

  • 16479537,8083174,19744498