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yocD
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yocD

similar to immunity to bacteriotoxins
locus
BSU_19170
pI
5.58
mw
36.25 kDa
protein length
325 aa Sequence Blast
gene length
978 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.18|Toxins, antitoxins and immunity against toxins/ based on similarity]
  • Gene

    Coordinates
    2,088,257 2,089,234

    The protein

    Protein family

  • peptidase S66 family (with [protein|C4F85F85F0C99A59145961E34B19D3AD03D2BC22|YkfA], according to UniProt)
  • Structure

  • [PDB|3SR3] (MccF from ''B. anthracis'', 33% identity, 66% similarity)
  • Expression and Regulation

    Operons

    genes
    [gene|CF8F38491E7DBDE77899D47E133B84DBB37C262C|yocC]-[gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]
    description
    [Pubmed|22383849]
    view in new tab

    genes
    [gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|20817675], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]
  • view in new tab

    Biological materials

    Mutant

  • MGNA-B413 (yocD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1412 NBRP B. subtilis, Japan]
  • BKE19170 ([gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE19170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCCTCCATCAATG, downstream forward: _UP4_TAATCAGCTTGTAAATTTTT
  • BKK19170 ([gene|6B36C3B0FA04FBCB20C2C9AEA987DDD211E29629|yocD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK19170 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATAGAACCCTCCATCAATG, downstream forward: _UP4_TAATCAGCTTGTAAATTTTT
  • References

  • 20817675