SubtiBank SubtiBank
ydgB
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ydgB

unknown
locus
BSU_05570
pI
3.49
mw
9.32 kDa
protein length
90 aa Sequence Blast
gene length
273 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 6|Groups of genes] → [category|SW 6.11|Efp-dependent proteins]

    • Gene

    Coordinates
    602,441 602,713

    Expression and Regulation

    Operons

    genes
    [gene|68E585F6670539982E8E8032337DA2043C67FCC4|ydgB]-[gene|483587EB658850D786C3C95C02D419994FCC9F45|ydgA]-[gene|8F85E6DE353F29759301A463335BFC15F829E2D0|cotP]
    description
    [Pubmed|22383849]

    sigma factors

  • [protein|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK]: sigma factor, [Pubmed|15699190], in [regulon|24F7FD5C7C3A68BB2760ABB8CBD8FBD65E5FF7D4|SigK regulon]

    • regulatory mechanism

  • [protein|19228BAD44E6DA3DE908DC390FDF628C18D94E65|GerE]: repression, [Pubmed|9068633], in [regulon|19228BAD44E6DA3DE908DC390FDF628C18D94E65|GerE regulon]

    • regulation

  • expressed during sporulation ([protein|6FAD8804AA32B84819DDE57C0AF63F208FB9FFD1|SigKC]) [Pubmed|15699190]
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    additional information

  • [protein|search|translation] is likely to require [protein|3054CD45713BBD69C2A528DE24AF6AF37175FD9D|Efp] due to the presence of several consecutive proline residues [PubMed|23239624,23239623]

    • Biological materials

    Mutant

  • MGNA-C173 (ydgB::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2171 NBRP B. subtilis, Japan]
  • BKE05570 ([gene|68E585F6670539982E8E8032337DA2043C67FCC4|ydgB]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE05570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCCATCACACCCTTCCA, downstream forward: _UP4_ATTTTAGATTAAAGGGGTTT
  • BKK05570 ([gene|68E585F6670539982E8E8032337DA2043C67FCC4|ydgB]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK05570 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATCCCATCACACCCTTCCA, downstream forward: _UP4_ATTTTAGATTAAAGGGGTTT

    • References

  • 15699190,9068633,11150673