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pnpA
polynucleotide phosphorylase, RNase, involved in double-strand break repair
Molecular weight
77.28 kDa
Function
DNA repair, competence development, RNA degradation
Product
polynucleotide phosphorylase (PNPase)
Genomic Context
Categories containing this gene/protein
Gene
Coordinates
1,739,383 1,741,500
Phenotypes of a mutant
The pnpA mutant is cold sensitive and sensitive to tetracyclin, it shows multiseptate filamentous growth PubMedThe mutant is deficient in genetic competence (no expression of the late competence genes) PubMedThe pnpA mutant exhibits reduced motility and reduced expression of the fla-che operon resulting from accumulation of slrA mRNA PubMedThe mutant overexpresses the trp and putB-putC-putP operons. The protein
Catalyzed reaction/ biological activity
3'-5' exoribonuclease, RNasePNPase degrades the trp mRNA from RNA-TRAP complexdegradation of the SlrA mRNA from the 3' end, through the Rho-dependent terminator PubMedinvolved in double-strand break (DSB) repair via homologous recombination (HR) or non-homologous end-joining (NHEJ) PubMeddegrades ssDNA (3' - 5') (stimulated by RecA, inhibited by SsbA) PubMedcan polymerize ssDNA at a free 3' OH end, stimulated by RecN PubMedphosphate + RNA(n+1) --> ribonucleoside 5'-diphosphate + RNA(n) (according to UniProt) Protein family
polyribonucleotide nucleotidyltransferase family (single member, according to UniProt)Domains
KH domain (aa 554-613) (according to UniProt)S1 domain (aa 623-691) (according to UniProt) Structure
5YJJ (protein from Staphylococcus aureus) PubMed3GCM (protein from E. coli, PNPase/RNase E micro-domain/RNA tetragonal crystal form ) Localization
cytoplasm (homogeneous) PubMed Additional information
required for the expression of late competence genes comGA and comK, requirement bypassed by a mecA disruption; may be necessary for modification of the srfAA transcript (stabilization or translation activation)belongs to the 100 most abundant proteins PubMed Expression and Regulation
Biological materials
Mutant
GP1748 (pnpA::aphA3), available in Jörg Stülke's lab, PubMedBKE16690 (pnpA::erm trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATACAATTACGAACTCCTC, downstream forward: _UP4_TAAATGAAAACATAAAAGGABKK16690 (pnpA::kan trpC2) available at BGSC, PubMed, upstream reverse: _UP1_CATACAATTACGAACTCCTC, downstream forward: _UP4_TAAATGAAAACATAAAAGGA Expression vectors
for expression, purification in E. coli with N-terminal His-tag, in pWH844: pGP838, available in Jörg Stülke's labfor expression/ purification from B. subtilis with N-terminal Strep-tag, for SPINE, in pGP380: pGP1342, available in Jörg Stülke's labfor chromosomal expression of PnpA-Strep (cat): GP1002, available in Jörg Stülke's labfor chromosomal expression of PnpA-Strep (spc): GP1038, available in Jörg Stülke's labpGP1439: IPTG inducible expression, purification in E. coli with N-terminal Strep-tag, in pGP172, available in Jörg Stülke's lab GFP fusion
GP1698 (in pBP43), expression of pnpA-GFP::spc under the native promoter, available in Jörg Stülke's lab PubMed Two-hybrid system
B. pertussis adenylate cyclase-based bacterial two hybrid system (BACTH), available in Jörg Stülke's lab, PubMed FLAG-tag construct
Labs working on this gene/protein
References
Reviews
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Original publications
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PNPase in ''E. coli
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