SubtiBank SubtiBank
pdaC
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pdaC

peptidoglycan deacetylase C
locus
BSU_12100
pI
9.10
mw
53.67 kDa
protein length
467 aa Sequence Blast
gene length
1404 bp Sequence Blast
function
cell wall modification
product
polysaccharide deacetylase C
essential
no
synonyms
yjeA

Genomic Context

      

categories

  • [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.5|Cell wall/ other]
  • Gene

    Coordinates
    1,281,128 1,282,531

    Phenotypes of a mutant

  • sensitive to lysozyme treatment [Pubmed|22277649]
  • The protein

    Catalyzed reaction/ biological activity

  • deacetylates N-acetylmuramic acid (MurNAc) but not GlcNAc from peptidoglycan [Pubmed|22277649]
  • Protein family

  • [SW|polysaccharide deacetylase family] (according to UniProt)
  • Paralogous protein(s)

  • [protein|2E2D21BEA164C7EB93B6A3F3C990ABD475920A81|YheN]:
  • [SW|Domains]

  • aa 55 - 140: DUF4163
  • aa 155 - 235: DUF3298
  • aa 278 - 452: NodB domain
  • Structure

  • [PDB|2C1G] (the NodB domain, from Streptococcus pneumoniae, 47% identity) [pubmed|16221761]
  • [PDB|3S5T] (the DUF3298 domain, from Bacteroides fragilis, 27% identity)
  • Expression and Regulation

    Operons

    genes
    [gene|603E226CE488A25C4E28A6A7363CCD65BE64BB21|pdaC]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|WalR]: repression, in [regulon|7F340423A34CE40D1F1AA8D373F7C4B859A6496D|WalR regulon]
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    additional information

  • the mRNA is cleaved by [protein|BAB297D18F94FFA67B8D12A684AB4D1BCDFB4981|RNase III] [PubMed|26883633]
  • Biological materials

    Mutant

  • MGNA-A355 (yjeA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/355 NBRP B. subtilis, Japan]
  • BKE12100 ([gene|603E226CE488A25C4E28A6A7363CCD65BE64BB21|pdaC]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE12100 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACAAAAACTCCTTCTTTC, downstream forward: _UP4_TAAATTAGAAAAGGCTGTCC
  • BKK12100 ([gene|603E226CE488A25C4E28A6A7363CCD65BE64BB21|pdaC]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK12100 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAACAAAAACTCCTTCTTTC, downstream forward: _UP4_TAAATTAGAAAAGGCTGTCC
  • References

  • 17878218,17581128,22277649,23199363,26883633,16221761,29465029