ybfG

putative pepdidoglycan binding protein

locus: BSU_02200

pI: 4.69

mw: 79.05 kDa

protein length: 732 aa

gene length: 2199 bp

function: unknown

product: putative pepdidoglycan binding protein

essential: no

synonyms

Genomic Context

categories

• [category|SW 1|Cellular processes] → [category|SW 1.1|Cell envelope and cell division] → [category|SW 1.1.6|Cell wall/ other/ based on similarity]
• [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

Gene

Coordinates: 239,644 241,842

The protein

Protein family

• fadG family (with [protein|0264C72F95D53F0211B52753DA37B4A8C0E982D2|FadG], according to UniProt)

Paralogous protein(s)

• [protein|0264C72F95D53F0211B52753DA37B4A8C0E982D2|FadG]

[SW|Localization]

• cell membrane (according to UniProt)

Expression and Regulation

Operons

• genes: [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]-[gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF]-[gene|3E2A864B904DE4D9F72D2B19257AE81CCED3BE12|ybfE]
  description: [Pubmed|22383849]

  regulation

  • the mRNA is processed between [gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG] and [gene|CEA0A2CE520B8A6E8E9D7C079B954B24137DF686|ybfF] by [protein|872CCB5A49C9000BD95E4B0472556D5F60F7D7A4|RNase Y], this requires the [protein|EE52DFA35B935E551871D079A9BE877DB2001A3B|YmcA]-[protein|6C9A092F38739A3759793EF8B496569CD02C2E3F|YlbF]-[protein|EBD15C174A03B7FCDFFE4C5DB5D86E93F1B9CAC4|YaaT] complex [Pubmed|29794222]

Biological materials

Mutant

• MGNA-B968 (ybfG::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1967 NBRP B. subtilis, Japan]
• BKE02200 ([gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE02200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGATTCCTCCTTTGT, downstream forward: _UP4_TAACTTTAATACAAAACTGC
• BKK02200 ([gene|5D159F09BFD98B58A7EDAD37A4DB6468A702D09A|ybfG]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK02200 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTTCGATTCCTCCTTTGT, downstream forward: _UP4_TAACTTTAATACAAAACTGC

References

Research papers

• 29794222