yvrJ

may be involved in response to acid stress

locus: BSU_33239

pI: 9.10

mw: 13.00 kDa

protein length: 112 aa

gene length: 339 bp

function: unknown

product: unknown

essential: -

synonyms

Genomic Context

categories

• [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.3|Acid stress proteins (controlled by YvrI-YvrHa)]

Gene

Coordinates: 3,410,007 3,410,345

The protein

Structure

• [PDB|3P56] (human protein, 29% identity) [pubmed|21177854]

Expression and Regulation

Operons

• genes: [gene|5B4A7F4DEA1252A396DD8D5EC9D94FF5EFADD9BA|yvrJ]
  description: [Pubmed|19047353]

  sigma factors

  • [protein|6359025A73C0BD313F5BCC6F56FE88B820902AAA|SigO]: sigma factor, [Pubmed|19047353], in [regulon|6359025A73C0BD313F5BCC6F56FE88B820902AAA|SigO regulon]
  • [protein|AE8D4F07EFB17DA727D80229C3E72075928AA352|RsoA]: sigma factor, in [regulon|AE8D4F07EFB17DA727D80229C3E72075928AA352|RsoA regulon]

  regulation

  • induced by acidic growth conditions [Pubmed|19047353]

Biological materials

Mutant

• BKE33239 ([gene|5B4A7F4DEA1252A396DD8D5EC9D94FF5EFADD9BA|yvrJ]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE33239 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TACGGTCAAAATGTAAGGAG, downstream forward: _UP4_TAATTTTTCAATCGAAGTTG
• BKK33239 ([gene|5B4A7F4DEA1252A396DD8D5EC9D94FF5EFADD9BA|yvrJ]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK33239 BGSC], [Pubmed|28189581], upstream reverse: _UP1_TACGGTCAAAATGTAAGGAG, downstream forward: _UP4_TAATTTTTCAATCGAAGTTG

labs

• [SW|John Helmann], Cornell University, USA [http://www.micro.cornell.edu/research/labs/helmann-lab/index.cfm Homepage]

References

• 18573182,19047353,19047353,21177854