SubtiBank SubtiBank
yqhH
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yqhH

similar to SNF2 helicase
locus
BSU_24580
pI
8.38
mw
64.50 kDa
protein length
557 aa Sequence Blast
gene length
1674 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.8|Genetics/ other/ based on similarity]
  • [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.9|Newly identified competence genes]
  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • Gene

    Coordinates
    2,549,775 2,551,448

    Phenotypes of a mutant

  • poorly transformable [pubmed|28189581]
  • The protein

    Protein family

  • [SW|helicase family] (according to UniProt)
  • SNF2/RAD54 helicase family (with [protein|265490FA83D6D3F178C26C9240E3CB224513BF42|YwqA], according to UniProt)
  • [SW|Domains]

  • [SW|Helicase ATP-binding domain] (aa 70-224) (according to UniProt)
  • [SW|Helicase C-terminal domain] (aa 363-524) (according to UniProt)
  • Structure

  • [PDB|1Z6A] (from Sulfolobus solfataricus, 27% identity) [PDB|15882619]
  • Expression and Regulation

    Operons

    genes
    [gene|565D91F3E0357C5B16CC342FCDA7EFD4B910829C|yqhH]-[gene|22BEB39F735DAAF71F1B382CD453A9C2D4CC9FA4|yqhG]

    sigma factors

  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [Pubmed|16497325], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]
  • regulation

  • expressed early during sporulation in the forespore ([protein|search|SigF]) [Pubmed|16497325]
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    Biological materials

    Mutant

  • MGNA-C418 (yqhH::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2416 NBRP B. subtilis, Japan]
  • BKE24580 ([gene|565D91F3E0357C5B16CC342FCDA7EFD4B910829C|yqhH]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE24580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCTTTGAAACCGCCTT, downstream forward: _UP4_TAGCCTGTAAGGAGGTTTTA
  • BKK24580 ([gene|565D91F3E0357C5B16CC342FCDA7EFD4B910829C|yqhH]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK24580 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTGCTTTGAAACCGCCTT, downstream forward: _UP4_TAGCCTGTAAGGAGGTTTTA
  • References

  • 16497325,28189581,15882619