SubtiBank SubtiBank
skfG [Tue Dec 13 2016 11:16:30 GMT+0100 (CET)]
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skfG [Tue Dec 13 2016 11:16:30 GMT+0100 (CET)]

unknown
locus
BSU01970
pI
5.19
mw
14.00 kDa
function
unknown
product
unknown
essential
no
synonyms
ybdD

Genomic Context

      

categories

  • [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.4|Prophage 1]
  • [category|SW 6|Groups of genes] → [category|SW 6.7|Proteins of unknown function]
  • [SW|Categories] containing this gene/protein

  • [SW|proteins of unknown function], [SW|prophage 1]
  • This gene is a member of the following [SW|regulons]

  • [SW|AbrB regulon], [SW|PhoP regulon], [SW|Spo0A regulon]
  • Gene

    Coordinates on the chromosome (coding sequence)
    219,087 -> 219,602

    Expression and Regulation

    Operon

  • ''[protein|search|skfA]-[protein|search|skfB]-[protein|search|skfC]-[protein|search|skfE]-[protein|search|skfF]-[protein|search|skfG]-[protein|search|skfH]'' [Pubmed|16816204]
  • [SW|Sigma factor]

  • [protein|search|SigA] [Pubmed|16452424]
  • Regulation

  • expressed under conditions that trigger sporulation ([SW|Spo0A]) [http://www.ncbi.nlm.nih.gov/sites/entrez/14651647,15687200 PubMed]
  • repressed during logrithmic growth ([protein|search|AbrB]) [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
  • induced by phosphate starvation ([protein|search|PhoP]) [Pubmed|16816204]
  • Regulatory mechanism

  • [SW|Spo0A]: transcription activation [http://www.ncbi.nlm.nih.gov/sites/entrez/14651647,15687200 PubMed]
  • [protein|search|AbrB]: transcription repression [http://www.ncbi.nlm.nih.gov/sites/entrez/15687200,17720793 PubMed]
  • [protein|search|PhoP]: transcription activation [Pubmed|16816204]
  • Additional information

  • Northern blotting during during phosphate limitation showed an intense 0.25 kb '[protein|search|skfA]'-specific transcript, and a weaker 6.5 kb '[protein|search|skfA]-[protein|search|skfB]-[protein|search|skfC]-[protein|search|skfE]-[protein|search|skfF]-[protein|search|skfG]-[protein|search|skfH]' transcript. [http://www.ncbi.nlm.nih.gov/pubmed/16816204 PubMed]
  • References

    Reviews

  • 20955377
  • Original Publications

  • 14651647,12817086,15687200,17720793,16816204