SubtiBank SubtiBank
yvcA
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yvcA

required for complex colony development
locus
BSU_34850
pI
6.83
mw
27.72 kDa
protein length
241 aa Sequence Blast
gene length
726 bp Sequence Blast
function
complex colony development
product
lipoprotein
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.2|Biofilm formation]
  • [category|SW 4|Lifestyles] → [category|SW 4.1|Exponential and early post-exponential lifestyles] → [category|SW 4.1.2|Biofilm formation] → [category|SW 4.1.2.5|Other proteins required for biofilm formation]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]

    • Gene

    Coordinates
    3,581,965 3,582,690

    The protein

    [SW|Localization]

  • cell membrane (according to UniProt)

    • Expression and Regulation

    Operons

    genes
    [gene|3D57D86B076CE5975C5A2516A6D26AEEFD143A55|yvcA]-[gene|56A098AF47D293AA2EC6E7E7EC2626A832BA51CD|yvcB]-[gene|F83570E87B0B3C09A17ECC60365EDF9B448C490F|yvzA]
    description
    [pubmed|22383849]

    regulatory mechanism

  • [protein|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB]: repression, [Pubmed|18978066], in [regulon|E5110D9C36E8C55AFD1419987B14A53232165F20|AbrB regulon]
  • [protein|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU]: activation, [protein|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU]-P, [Pubmed|17590234], in [regulon|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU regulon]
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    Biological materials

    Mutant

  • MGNA-A379 (yvcA::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/379 NBRP B. subtilis, Japan]
  • BKE34850 ([gene|3D57D86B076CE5975C5A2516A6D26AEEFD143A55|yvcA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE34850 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTACGAACCTCCACGGGT, downstream forward: _UP4_TTAATAGATAAAAAGGAGAA
  • BKK34850 ([gene|3D57D86B076CE5975C5A2516A6D26AEEFD143A55|yvcA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK34850 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATTACGAACCTCCACGGGT, downstream forward: _UP4_TTAATAGATAAAAAGGAGAA

    • References

  • 18978066,17590234