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yitM [2019-10-18 09:12:56]
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yitM [2019-10-18 09:12:56]

unknown
locus
BSU_11040
pI
4.77
mw
21.32 kDa
protein length
194 aa Sequence Blast
gene length
585 bp Sequence Blast
function
unknown
product
unknown
essential
no
synonyms

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.17|Toxins, antitoxins and immunity against toxins] → [category|SW 4.3.17.3|Toxins, antitoxins and immunity/ Additional genes]
  • [category|SW 6|Groups of genes] → [category|SW 6.2|Membrane proteins]
  • Gene

    Coordinates
    1,182,448 1,183,032

    The protein

    Paralogous protein(s)

  • [protein|820635420B3980B620F3E3D7ACF7EDE9DC6275AD|SdpC]
  • [SW|Localization]

  • membrane (according to UniProt)
  • Expression and Regulation

    Operons

    genes
    [gene|330CB6A25181F7AFD3C63F73CA21A3428882D100|yitM]
    description
    [pubmed|22383849]
    view in new tab

    genes
    [gene|FBA412B070CE4FFE554F2657E0F745EF5C853B8A|yitP]-[gene|81E929FD7F66A996300C8412BE172883C262BD67|yitO]-[gene|330CB6A25181F7AFD3C63F73CA21A3428882D100|yitM]
    description
    [Pubmed|17850253]

    regulatory mechanism

  • [protein|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU]: activation, [pubmed|17850253], in [regulon|D343D2096664A972026D911E7A17A35C7B1CD1C9|DegU regulon]
  • regulation

  • induced in biofilms ([SW|DegU]) [Pubmed|17850253]
  • view in new tab

    Biological materials

    Mutant

  • MGNA-B213 (yitM::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/1212 NBRP B. subtilis, Japan]
  • BKE11040 ([gene|330CB6A25181F7AFD3C63F73CA21A3428882D100|yitM]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE11040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAATACTAGAAACGCCT, downstream forward: _UP4_TAGACATAAAAAAACGGCTC
  • BKK11040 ([gene|330CB6A25181F7AFD3C63F73CA21A3428882D100|yitM]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK11040 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CAAAAATACTAGAAACGCCT, downstream forward: _UP4_TAGACATAAAAAAACGGCTC
  • References

    Research papers

  • 31622331