spoIVCA [2019-07-05 12:01:28]

site-specific DNA recombinase required for creating the sigK gene (excision of the skin element)

locus: BSU25770

pI: 9.50

mw: 57.31 kDa

protein length: 500 aa

gene length: 1503 bp

function: excision of the skin element, creation of the sigK gene

product: site-specific DNA recombinase

essential: no

synonyms: cisA

Genomic Context

categories

• [category|SW 3|Information processing] → [category|SW 3.1|Genetics] → [category|SW 3.1.5|DNA repair/ recombination] → [category|SW 3.1.5.1|Excision of prophages]
• [category|SW 3|Information processing] → [category|SW 3.4|Regulation of gene expression] → [category|SW 3.4.1|Sigma factors and their control] → [category|SW 3.4.1.2|Control of sigma factors]
• [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
• [category|SW 5|Prophages and mobile genetic elements] → [category|SW 5.1|Prophages] → [category|SW 5.1.3|Skin element]

Gene

Coordinates: 2,653,371 2,654,873

The protein

Protein family

• [SW|site-specific recombinase resolvase family] (according to UniProt)

Biological materials

Mutant

• BKE25770 ([gene|318618D2FB485EA2A08AD8468B1144ACC1CA2B99|spoIVCA]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE25770 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCCTGAATCTCCTTCCTA, downstream forward: _UP4_TTTCAATCAATCGGTGCAGA
• BKK25770 ([gene|318618D2FB485EA2A08AD8468B1144ACC1CA2B99|spoIVCA]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK25770 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CACCCTGAATCTCCTTCCTA, downstream forward: _UP4_TTTCAATCAATCGGTGCAGA

References

• 2163341,2105293,2841290,7966271