SubtiBank SubtiBank
yfhD
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yfhD

general stress protein, survival of ethanol stress and low temperatures
locus
BSU_08490
pI
9.77
mw
7.19 kDa
protein length
63 aa Sequence Blast
gene length
192 bp Sequence Blast
function
survival of ethanol stress and low temperatures
product
unknown
essential
no
synonyms
Outlinks
KEGGBsubCycSubtiListUniProtExpression Browser

Genomic Context

      

categories

  • [category|SW 4|Lifestyles] → [category|SW 4.2|Sporulation] → [category|SW 4.2.1|Sporulation proteins] → [category|SW 4.2.1.4|Sporulation proteins/ other]
  • [category|SW 4|Lifestyles] → [category|SW 4.3|Coping with stress] → [category|SW 4.3.1|General stress proteins (controlled by SigB)]

    • Gene

    Coordinates
    924,210 924,401

    Expression and Regulation

    Operons

    genes
    [gene|B2924DAA879FBE56EB8DF9A7C60222AA1EE5526C|yfhF]-[gene|EE8065E719D0359B5892C8DCBCEC0B246ABE7D5B|yfhE]-[gene|29A9F7EEC3EFD8CA913877C41C1F00BCE9FF384D|yfhD]
    description
    [Pubmed|27965289]

    sigma factors

  • [protein|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB]: sigma factor, [Pubmed|15805528], in [regulon|580011DE5DC40EC9E7E0512791D328FAA010DCB8|SigB regulon]
  • [protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]: sigma factor, [Pubmed|15699190], in [regulon|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF regulon]
  • [protein|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG]: sigma factor, [Pubmed|15699190], in [regulon|5F24258282F3166B7696B9E9ABC1706E4D06C944|SigG regulon]

    • regulation

  • expressed early during sporulation in the forespore ([protein|CFF318EE6CACDEE763FBF96A2ABB46E944679AAA|SigF]) [Pubmed|15699190]

    • additional information

  • An [ncRNA|search|antisense RNA] is predicted for '[protein|29A9F7EEC3EFD8CA913877C41C1F00BCE9FF384D|YfhD]' [PubMed|20525796]
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    additional information

  • the mRNA belongs to the 46 most abundant mRNA species in dormant spores [pubmed|30782632]

    • Biological materials

    Mutant

  • MGNA-C359 (yfhD::erm), available at the [https://shigen.nig.ac.jp/bsub/resource/strainGeneDisrupted/detail/2357 NBRP B. subtilis, Japan]
  • BKE08490 ([gene|29A9F7EEC3EFD8CA913877C41C1F00BCE9FF384D|yfhD]::erm trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKE08490 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCAAATTCCCCCTAAA, downstream forward: _UP4_TAATGAAAAACCCCTTGTCT
  • BKK08490 ([gene|29A9F7EEC3EFD8CA913877C41C1F00BCE9FF384D|yfhD]::kan trpC2) available at [http://www.bgsc.org/getdetail.php?bgscid=BKK08490 BGSC], [Pubmed|28189581], upstream reverse: _UP1_CATATCAAATTCCCCCTAAA, downstream forward: _UP4_TAATGAAAAACCCCTTGTCT

    • References

  • 15805528,12480901,15699190,20525796,30782632